BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M06 (856 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19268| Best HMM Match : NOT2_3_5 (HMM E-Value=0) 173 2e-43 SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0) 56 5e-08 SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25) 30 2.1 SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45) 30 2.1 SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1 SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8) 29 3.6 SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 29 4.8 SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4 SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4 SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 29 6.4 SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_19268| Best HMM Match : NOT2_3_5 (HMM E-Value=0) Length = 165 Score = 173 bits (421), Expect = 2e-43 Identities = 75/112 (66%), Positives = 90/112 (80%) Frame = -1 Query: 436 PPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKV 257 PPEY IN IREKLAP++L RY EDLLFYL+Y GD+LQ+AAAAELY R+WRYH EE+V Sbjct: 50 PPEYRINSFIREKLAPIKLSRYGEDLLFYLYYTNGGDILQLAAAAELYARDWRYHKEERV 109 Query: 256 WISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRPQLPP 101 W+++APG+ K++ YERGTYYFFD WRKVPKEFHL+Y KLE +P L P Sbjct: 110 WLTRAPGVEPQVKSNNYERGTYYFFDCQAWRKVPKEFHLEYDKLEEKPTLHP 161 >SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0) Length = 584 Score = 55.6 bits (128), Expect = 5e-08 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = -1 Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197 R + LF++FY G Q AA L + WR+H + +W + + T YE+G Sbjct: 496 RLSPETLFFIFYYQEGTRAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKAI--TDEYEQG 553 Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116 TY +FD W + KE F +Y LE + Sbjct: 554 TYIYFDYEKWGQRKKEGFTFEYRYLEDK 581 >SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25) Length = 190 Score = 30.3 bits (65), Expect = 2.1 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -1 Query: 682 QTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSL 560 +++PE + I M N G + L FI A+SDPS+V L Sbjct: 142 ESTPEKRTDKIFRQMDKNLDGKLSLAEFIEGAKSDPSIVRL 182 >SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45) Length = 348 Score = 30.3 bits (65), Expect = 2.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 97 HGAVTAADPPACCNPNETLSAPFSNCAHRRSS 192 HG T D C +P+E +P +NC ++ SS Sbjct: 146 HGTGTCEDKDECASPDENDCSPDANCINKLSS 177 >SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 7645 Score = 30.3 bits (65), Expect = 2.1 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -1 Query: 649 PDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTF 491 P +P G V L +S P VSL++ D G++ P++L +TF Sbjct: 1757 PSKTVPEGAGTVNLTLTRTGDKSVPHTVSLSIKNDTAYSGVDFTPPEDLLVTF 1809 >SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8) Length = 129 Score = 29.5 bits (63), Expect = 3.6 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +1 Query: 622 QIGXVSLYPVCXXLCLQEKSVSLCASCLVRVQC 720 Q G V + P+C ++ VSLCA C+ V C Sbjct: 20 QCGRVVMNPICTCRYVRSVDVSLCAQCVRVVIC 52 >SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) Length = 1592 Score = 29.1 bits (62), Expect = 4.8 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 130 CCNPNETLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRSTPSP 267 CCNP+ + C+ RR CR ++ S + CRA S P Sbjct: 108 CCNPHTCRLYAHAQCSDRRDKCCRNCSIAPS-GMPCRAAADSCDVP 152 >SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 480 Score = 28.7 bits (61), Expect = 6.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 190 YFFDAHNWRKVPKEFHLDYSKLEGRPQLPP 101 Y+ HN + FHL +K+EG +LPP Sbjct: 157 YYVYHHNVITITSVFHLTETKMEGGGELPP 186 >SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2870 Score = 28.7 bits (61), Expect = 6.4 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +1 Query: 121 PPACCNPNETLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRSTPSPP 270 P CC + + + CA + S+C + K P AL+ +TP+PP Sbjct: 1812 PVMCCKNSSPATECPTICASKCISKCPEKCCKQPEPQP--ALLSTTPTPP 1859 >SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) Length = 865 Score = 28.7 bits (61), Expect = 6.4 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +1 Query: 205 RTLKSSRPLACRALVRSTPSPPYDIAIRDCITLLQPQFVKRHQRNSRTN 351 R L + P R +R T SP I ++ QP F +Q+N +TN Sbjct: 262 RKLLGNIPPVPRYYIRVTRSPVRIIPLQHSPVAFQPAFAVAYQQNQKTN 310 >SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 698 Score = 28.3 bits (60), Expect = 8.4 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -2 Query: 321 YKLRLQQSYTIANGDIIWRRRCGSHKRPACQWSRRLQRTNAAPTT-SSMRTIGERCRKSF 145 +K +L + D+ RC P+ Q +R Q+T A PTT S C K+F Sbjct: 6 HKCQLCSRSFLTQPDLSRHMRCHEKMTPSKQETREEQKTTAVPTTMDSSAYQCNNCSKAF 65 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,515,360 Number of Sequences: 59808 Number of extensions: 487565 Number of successful extensions: 1175 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1037 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1167 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2431332827 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -