BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M06 (856 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 225 2e-59 U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 225 2e-59 U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 225 2e-59 U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 71 1e-12 U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 71 1e-12 Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 58 8e-09 Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical pr... 58 8e-09 AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 58 8e-09 U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 29 3.2 AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 29 3.2 L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 28 7.4 L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 28 7.4 >U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast ccr4/not complexcomponent) protein 2, isoform c protein. Length = 317 Score = 225 bits (551), Expect = 2e-59 Identities = 103/199 (51%), Positives = 141/199 (70%), Gaps = 1/199 (0%) Frame = -1 Query: 688 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 512 GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S Sbjct: 36 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 94 Query: 511 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 332 L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY Sbjct: 95 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 154 Query: 331 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 152 ++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK Sbjct: 155 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 214 Query: 151 EFHLDYSKLEGRPQLPPHV 95 E L+Y +LE RP++P V Sbjct: 215 ELKLEYKELEDRPKMPQSV 233 >U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast ccr4/not complexcomponent) protein 2, isoform b protein. Length = 367 Score = 225 bits (551), Expect = 2e-59 Identities = 103/199 (51%), Positives = 141/199 (70%), Gaps = 1/199 (0%) Frame = -1 Query: 688 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 512 GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S Sbjct: 86 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 144 Query: 511 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 332 L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY Sbjct: 145 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 204 Query: 331 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 152 ++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK Sbjct: 205 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 264 Query: 151 EFHLDYSKLEGRPQLPPHV 95 E L+Y +LE RP++P V Sbjct: 265 ELKLEYKELEDRPKMPQSV 283 >U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast ccr4/not complexcomponent) protein 2, isoform a protein. Length = 444 Score = 225 bits (551), Expect = 2e-59 Identities = 103/199 (51%), Positives = 141/199 (70%), Gaps = 1/199 (0%) Frame = -1 Query: 688 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 512 GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S Sbjct: 163 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 221 Query: 511 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 332 L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY Sbjct: 222 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 281 Query: 331 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 152 ++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK Sbjct: 282 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 341 Query: 151 EFHLDYSKLEGRPQLPPHV 95 E L+Y +LE RP++P V Sbjct: 342 ELKLEYKELEDRPKMPQSV 360 >U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily assigned gene nameprotein 153, isoform a protein. Length = 497 Score = 70.5 bits (165), Expect = 1e-12 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 28/176 (15%) Frame = -1 Query: 673 PEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS--------------LALG 551 P+G + NIP TM+ +Q+G+ +L + RA ++ L + +G Sbjct: 121 PDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDKIKNENIEMMTIG 180 Query: 550 QDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPEYLINGSIREKLA 392 DL LG+ + + D TFAGP+A P P +M VP Y +++ Sbjct: 181 FDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNVYYTARTLQSSFD 240 Query: 391 PLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 230 L ++ LFY+FY ++ Q+ AA EL R WRY+M+EK+W+ + G P Sbjct: 241 MLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 296 >U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily assigned gene nameprotein 153, isoform b protein. Length = 733 Score = 70.5 bits (165), Expect = 1e-12 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 28/176 (15%) Frame = -1 Query: 673 PEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS--------------LALG 551 P+G + NIP TM+ +Q+G+ +L + RA ++ L + +G Sbjct: 357 PDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDKIKNENIEMMTIG 416 Query: 550 QDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPEYLINGSIREKLA 392 DL LG+ + + D TFAGP+A P P +M VP Y +++ Sbjct: 417 FDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNVYYTARTLQSSFD 476 Query: 391 PLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 230 L ++ LFY+FY ++ Q+ AA EL R WRY+M+EK+W+ + G P Sbjct: 477 MLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 532 >Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical protein Y56A3A.1a protein. Length = 701 Score = 58.0 bits (134), Expect = 8e-09 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -1 Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197 R D LF++FY G Q+ AA L WR+H + W + + T YE+G Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670 Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116 TY +FD W + KE F +Y LE + Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698 >Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical protein Y56A3A.1b protein. Length = 198 Score = 58.0 bits (134), Expect = 8e-09 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -1 Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197 R D LF++FY G Q+ AA L WR+H + W + + T YE+G Sbjct: 110 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 167 Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116 TY +FD W + KE F +Y LE + Sbjct: 168 TYVYFDFEKWSQRKKESFTFEYKFLEDK 195 >AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical protein Y56A3A.1a protein. Length = 701 Score = 58.0 bits (134), Expect = 8e-09 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -1 Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197 R D LF++FY G Q+ AA L WR+H + W + + T YE+G Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670 Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116 TY +FD W + KE F +Y LE + Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698 >U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family protein 11 protein. Length = 317 Score = 29.5 bits (63), Expect = 3.2 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Frame = +1 Query: 121 PPACCNPNE-TLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRSTPSPPYDIAIRDCI 297 PPACC P+E P+ N R S C + +S + + S + + I+ CI Sbjct: 212 PPACCPPDEHGRLRPYCNTIMRHSHGCYAKIAESFEEVTSHFKIVSWTVVLFAL-IQGCI 270 Query: 298 TLLQPQFVKRHQRNSRTNRIIDLLYIFRVVEALV 399 T P + + S I+ +L IF +V +V Sbjct: 271 T---PLYRESQIHFSAIFSILVVLTIFDIVLFIV 301 >AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical protein Y73C8C.7 protein. Length = 574 Score = 29.5 bits (63), Expect = 3.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 208 TLKSSRPLACRALVRSTPSPPYDIAIRDCITLLQ 309 T K PL C L++ TP PP ++ +C+ L+ Sbjct: 492 TFKEKAPLICAQLLK-TPEPPNELDDNECLVCLE 524 >L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with ran (nuclear import/export) function protein 2, isoform b protein. Length = 926 Score = 28.3 bits (60), Expect = 7.4 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 284 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 144 ++++ G+ D ARH G DF R LL + E+GAE S Sbjct: 313 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 359 >L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with ran (nuclear import/export) function protein 2, isoform a protein. Length = 960 Score = 28.3 bits (60), Expect = 7.4 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 284 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 144 ++++ G+ D ARH G DF R LL + E+GAE S Sbjct: 350 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 396 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,298,678 Number of Sequences: 27780 Number of extensions: 354575 Number of successful extensions: 952 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 904 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 941 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2129473654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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