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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M06
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...   225   2e-59
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...   225   2e-59
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...   225   2e-59
U41993-8|AAA83449.1|  497|Caenorhabditis elegans Temporarily ass...    71   1e-12
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    71   1e-12
Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical pr...    58   8e-09
Z92826-5|CAB07318.1|  198|Caenorhabditis elegans Hypothetical pr...    58   8e-09
AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical...    58   8e-09
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    29   3.2  
AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical ...    29   3.2  
L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with...    28   7.4  
L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with...    28   7.4  

>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score =  225 bits (551), Expect = 2e-59
 Identities = 103/199 (51%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
 Frame = -1

Query: 688 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 512
           GI T P+G+VTNIP +M+ +QFG+ GL+T++R  ++ PS+VSLALG DLT LGLNLN S 
Sbjct: 36  GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 94

Query: 511 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 332
             L + F GPWAD+P R  ++D  VP EY+ +  IR+KL PLRL +  ED+LFYLFY   
Sbjct: 95  RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 154

Query: 331 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 152
            ++ Q+AAA ELY REWR+H  E+VW++++    + E+T  YE+G Y  FD   WRK+PK
Sbjct: 155 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 214

Query: 151 EFHLDYSKLEGRPQLPPHV 95
           E  L+Y +LE RP++P  V
Sbjct: 215 ELKLEYKELEDRPKMPQSV 233


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score =  225 bits (551), Expect = 2e-59
 Identities = 103/199 (51%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
 Frame = -1

Query: 688 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 512
           GI T P+G+VTNIP +M+ +QFG+ GL+T++R  ++ PS+VSLALG DLT LGLNLN S 
Sbjct: 86  GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 144

Query: 511 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 332
             L + F GPWAD+P R  ++D  VP EY+ +  IR+KL PLRL +  ED+LFYLFY   
Sbjct: 145 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 204

Query: 331 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 152
            ++ Q+AAA ELY REWR+H  E+VW++++    + E+T  YE+G Y  FD   WRK+PK
Sbjct: 205 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 264

Query: 151 EFHLDYSKLEGRPQLPPHV 95
           E  L+Y +LE RP++P  V
Sbjct: 265 ELKLEYKELEDRPKMPQSV 283


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score =  225 bits (551), Expect = 2e-59
 Identities = 103/199 (51%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
 Frame = -1

Query: 688 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 512
           GI T P+G+VTNIP +M+ +QFG+ GL+T++R  ++ PS+VSLALG DLT LGLNLN S 
Sbjct: 163 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 221

Query: 511 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 332
             L + F GPWAD+P R  ++D  VP EY+ +  IR+KL PLRL +  ED+LFYLFY   
Sbjct: 222 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 281

Query: 331 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 152
            ++ Q+AAA ELY REWR+H  E+VW++++    + E+T  YE+G Y  FD   WRK+PK
Sbjct: 282 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 341

Query: 151 EFHLDYSKLEGRPQLPPHV 95
           E  L+Y +LE RP++P  V
Sbjct: 342 ELKLEYKELEDRPKMPQSV 360


>U41993-8|AAA83449.1|  497|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform a protein.
          Length = 497

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
 Frame = -1

Query: 673 PEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS--------------LALG 551
           P+G + NIP TM+ +Q+G+  +L  +     RA  ++  L                + +G
Sbjct: 121 PDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDKIKNENIEMMTIG 180

Query: 550 QDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPEYLINGSIREKLA 392
            DL  LG+ + + D        TFAGP+A  P  P +M      VP  Y    +++    
Sbjct: 181 FDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNVYYTARTLQSSFD 240

Query: 391 PLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 230
            L     ++    LFY+FY    ++ Q+ AA EL  R WRY+M+EK+W+ +  G P
Sbjct: 241 MLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 296


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
 Frame = -1

Query: 673 PEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS--------------LALG 551
           P+G + NIP TM+ +Q+G+  +L  +     RA  ++  L                + +G
Sbjct: 357 PDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDKIKNENIEMMTIG 416

Query: 550 QDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPEYLINGSIREKLA 392
            DL  LG+ + + D        TFAGP+A  P  P +M      VP  Y    +++    
Sbjct: 417 FDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNVYYTARTLQSSFD 476

Query: 391 PLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 230
            L     ++    LFY+FY    ++ Q+ AA EL  R WRY+M+EK+W+ +  G P
Sbjct: 477 MLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 532


>Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = -1

Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197
           R   D LF++FY   G   Q+ AA  L    WR+H +   W  +      +  T  YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670

Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116
           TY +FD   W +  KE F  +Y  LE +
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698


>Z92826-5|CAB07318.1|  198|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1b protein.
          Length = 198

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = -1

Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197
           R   D LF++FY   G   Q+ AA  L    WR+H +   W  +      +  T  YE+G
Sbjct: 110 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 167

Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116
           TY +FD   W +  KE F  +Y  LE +
Sbjct: 168 TYVYFDFEKWSQRKKESFTFEYKFLEDK 195


>AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = -1

Query: 376 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 197
           R   D LF++FY   G   Q+ AA  L    WR+H +   W  +      +  T  YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670

Query: 196 TYYFFDAHNWRKVPKE-FHLDYSKLEGR 116
           TY +FD   W +  KE F  +Y  LE +
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEYKFLEDK 698


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 121 PPACCNPNE-TLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRSTPSPPYDIAIRDCI 297
           PPACC P+E     P+ N   R S  C  +  +S   +     + S     + + I+ CI
Sbjct: 212 PPACCPPDEHGRLRPYCNTIMRHSHGCYAKIAESFEEVTSHFKIVSWTVVLFAL-IQGCI 270

Query: 298 TLLQPQFVKRHQRNSRTNRIIDLLYIFRVVEALV 399
           T   P + +     S    I+ +L IF +V  +V
Sbjct: 271 T---PLYRESQIHFSAIFSILVVLTIFDIVLFIV 301


>AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical
           protein Y73C8C.7 protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 208 TLKSSRPLACRALVRSTPSPPYDIAIRDCITLLQ 309
           T K   PL C  L++ TP PP ++   +C+  L+
Sbjct: 492 TFKEKAPLICAQLLK-TPEPPNELDDNECLVCLE 524


>L23651-7|AAM22042.1|  926|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 284 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 144
           ++++  G+  D   ARH  G  DF  R    LL    + E+GAE  S
Sbjct: 313 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 359


>L23651-6|AAK84496.3|  960|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 2, isoform
           a protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 284 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRCAQLEKGAERVS 144
           ++++  G+  D   ARH  G  DF  R    LL    + E+GAE  S
Sbjct: 350 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,678
Number of Sequences: 27780
Number of extensions: 354575
Number of successful extensions: 952
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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