BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M06 (856 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ... 126 1e-29 At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ... 86 3e-17 At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 50 1e-06 At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 31 0.74 At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 29 3.0 At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 29 5.2 At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in... 28 6.9 At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 28 9.1 At1g03910.1 68414.m00376 expressed protein low similarity to cac... 28 9.1 >At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 family protein contains Pfam domain PF04153: NOT2 / NOT3 / NOT5 family Length = 556 Score = 126 bits (305), Expect = 1e-29 Identities = 74/174 (42%), Positives = 101/174 (58%), Gaps = 1/174 (0%) Frame = -1 Query: 625 FGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQDMD 446 F ++GLL + S+P L SLALG DLT LGL+LNS NL TFA PW + P + +++ Sbjct: 387 FCLLGLLDVLN--RSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAK-SEVE 443 Query: 445 YHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHME 266 + VP Y + L R+ +LLFY FY D Q+ AA ELY R W YH E Sbjct: 444 FTVPNCYY--ATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKE 501 Query: 265 EKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKE-FHLDYSKLEGRPQL 107 +VW + G P+V + +TYERGTY + D ++++ V KE F + Y +E RP L Sbjct: 502 LRVWFFRV-GEPLV-RAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL 553 >At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga (GI:1658504) [Drosophila melanogaster] Length = 444 Score = 85.8 bits (203), Expect = 3e-17 Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%) Frame = -1 Query: 634 PNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQ 455 P++FG++GLL+ I+ SDP L SLALG DLT LGLNLNS +NL+ TF PW++ P + Sbjct: 337 PDRFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSK-V 393 Query: 454 DMDYHVPPEYLINGSIREKLAPLRLGRYKE---DLLFYLFYCFVGDVLQIAAAAEL 296 D ++ VP Y PL G + + + LFY+FY D Q+ AA EL Sbjct: 394 DPEFSVPQCYYAKNP-----PPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANEL 444 >At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 family protein contains Pfam domain PF04153: NOT2 / NOT3 / NOT5 family Length = 843 Score = 50.4 bits (115), Expect = 1e-06 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 12/100 (12%) Frame = -1 Query: 385 RLGR--YKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTS 212 RLG Y D LF+ FY Q AA EL + WRYH + W Q P + T Sbjct: 741 RLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWF-QRHKEPKI-ATD 798 Query: 211 TYERGTYYFFDAH---------NW-RKVPKEFHLDYSKLE 122 YE+G Y +FD W +++ EF +YS LE Sbjct: 799 EYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLE 838 >At2g45870.1 68415.m05705 expressed protein contains Pfam profile PF05249: Uncharacterised protein family (UPF0187) Length = 410 Score = 31.5 bits (68), Expect = 0.74 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 468 GVSAHGPANVKLRLSGEFKFNPKAVKSCPNASDTRLGSDSAARIKVNRPTIPNW 629 G+SA P ++ FKFNP V S P + D+ L + +K +PNW Sbjct: 26 GISARAPKSL------HFKFNPSCVSSGPKSDDSPLSEKLISLLK----AVPNW 69 >At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to transcription factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 862 Score = 29.5 bits (63), Expect = 3.0 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Frame = +1 Query: 118 DPPACCNPNETLSAPFSNCAHRRSSRCRVRTLKSSRPLA--CR-ALVRS----TPSPPYD 276 D P C +P + + CAH C ++TL+ S+PL CR +L +S P PP D Sbjct: 615 DCPICISPPTNII--ITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPD 672 Query: 277 IAIRD 291 + D Sbjct: 673 SSNTD 677 >At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase domain-containing protein similar to SP|O14981 TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo sapiens}; contains PFam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 2049 Score = 28.7 bits (61), Expect = 5.2 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -1 Query: 598 IRAAESDPSLVSLALGQDLTALGLNLNSPDNL 503 ++A SDP++ L L + LGLNL S D L Sbjct: 1869 VKAFNSDPTIDVLLLTTHVGGLGLNLTSADTL 1900 >At5g38670.1 68418.m04676 F-box family protein similar to SKP1 interacting partner 6 [Arabidopsis thaliana] GI:10716957; contains Pfam profile PF00646: F-box domain Length = 291 Score = 28.3 bits (60), Expect = 6.9 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = -1 Query: 352 YLFYCF--VGDVLQIAAAAELYNREWRYHMEEKVW 254 YL+ C+ +G+V ++ W YH EE+ W Sbjct: 172 YLYDCYRNIGNVWYTIVKGDISTSVWWYHSEEREW 206 >At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / acetohydroxy-acid synthase (ALS) nearly identical to SP|P17597 Acetolactate synthase, chloroplast precursor (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid synthase) (ALS) {Arabidopsis thaliana} Length = 670 Score = 27.9 bits (59), Expect = 9.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 139 PNETLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRST 258 P S PFS ++ SS R R +KSS P + A++ +T Sbjct: 30 PISRFSLPFSLNPNKSSSSSRRRGIKSSSPSSISAVLNTT 69 >At1g03910.1 68414.m00376 expressed protein low similarity to cactin [Drosophila melanogaster] GI:7673675; expression supported by MPSS Length = 672 Score = 27.9 bits (59), Expect = 9.1 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -1 Query: 175 HNWRKVPKEFHLDYSKLEGRPQL 107 H+W K +EFH D SK+ +L Sbjct: 202 HDWEKKEEEFHFDQSKVRSEIRL 224 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,495,933 Number of Sequences: 28952 Number of extensions: 334858 Number of successful extensions: 904 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 899 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1989897600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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