Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M06
(856 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ... 126 1e-29
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ... 86 3e-17
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 50 1e-06
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 31 0.74
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 29 3.0
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 29 5.2
At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in... 28 6.9
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 28 9.1
At1g03910.1 68414.m00376 expressed protein low similarity to cac... 28 9.1
>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 556
Score = 126 bits (305), Expect = 1e-29
Identities = 74/174 (42%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Frame = -1
Query: 625 FGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQDMD 446
F ++GLL + S+P L SLALG DLT LGL+LNS NL TFA PW + P + +++
Sbjct: 387 FCLLGLLDVLN--RSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAK-SEVE 443
Query: 445 YHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHME 266
+ VP Y + L R+ +LLFY FY D Q+ AA ELY R W YH E
Sbjct: 444 FTVPNCYY--ATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKE 501
Query: 265 EKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKE-FHLDYSKLEGRPQL 107
+VW + G P+V + +TYERGTY + D ++++ V KE F + Y +E RP L
Sbjct: 502 LRVWFFRV-GEPLV-RAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL 553
>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
(GI:1658504) [Drosophila melanogaster]
Length = 444
Score = 85.8 bits (203), Expect = 3e-17
Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Frame = -1
Query: 634 PNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQ 455
P++FG++GLL+ I+ SDP L SLALG DLT LGLNLNS +NL+ TF PW++ P +
Sbjct: 337 PDRFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSK-V 393
Query: 454 DMDYHVPPEYLINGSIREKLAPLRLGRYKE---DLLFYLFYCFVGDVLQIAAAAEL 296
D ++ VP Y PL G + + + LFY+FY D Q+ AA EL
Sbjct: 394 DPEFSVPQCYYAKNP-----PPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANEL 444
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Frame = -1
Query: 385 RLGR--YKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTS 212
RLG Y D LF+ FY Q AA EL + WRYH + W Q P + T
Sbjct: 741 RLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWF-QRHKEPKI-ATD 798
Query: 211 TYERGTYYFFDAH---------NW-RKVPKEFHLDYSKLE 122
YE+G Y +FD W +++ EF +YS LE
Sbjct: 799 EYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLE 838
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 468 GVSAHGPANVKLRLSGEFKFNPKAVKSCPNASDTRLGSDSAARIKVNRPTIPNW 629
G+SA P ++ FKFNP V S P + D+ L + +K +PNW
Sbjct: 26 GISARAPKSL------HFKFNPSCVSSGPKSDDSPLSEKLISLLK----AVPNW 69
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +1
Query: 118 DPPACCNPNETLSAPFSNCAHRRSSRCRVRTLKSSRPLA--CR-ALVRS----TPSPPYD 276
D P C +P + + CAH C ++TL+ S+PL CR +L +S P PP D
Sbjct: 615 DCPICISPPTNII--ITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPD 672
Query: 277 IAIRD 291
+ D
Sbjct: 673 SSNTD 677
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 598 IRAAESDPSLVSLALGQDLTALGLNLNSPDNL 503
++A SDP++ L L + LGLNL S D L
Sbjct: 1869 VKAFNSDPTIDVLLLTTHVGGLGLNLTSADTL 1900
>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 291
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 352 YLFYCF--VGDVLQIAAAAELYNREWRYHMEEKVW 254
YL+ C+ +G+V ++ W YH EE+ W
Sbjct: 172 YLYDCYRNIGNVWYTIVKGDISTSVWWYHSEEREW 206
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 139 PNETLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRST 258
P S PFS ++ SS R R +KSS P + A++ +T
Sbjct: 30 PISRFSLPFSLNPNKSSSSSRRRGIKSSSPSSISAVLNTT 69
>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
[Drosophila melanogaster] GI:7673675; expression
supported by MPSS
Length = 672
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 175 HNWRKVPKEFHLDYSKLEGRPQL 107
H+W K +EFH D SK+ +L
Sbjct: 202 HDWEKKEEEFHFDQSKVRSEIRL 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,933
Number of Sequences: 28952
Number of extensions: 334858
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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