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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M06
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ...   126   1e-29
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ...    86   3e-17
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    50   1e-06
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    31   0.74 
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    29   3.0  
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica...    29   5.2  
At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in...    28   6.9  
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac...    28   9.1  
At1g03910.1 68414.m00376 expressed protein low similarity to cac...    28   9.1  

>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 556

 Score =  126 bits (305), Expect = 1e-29
 Identities = 74/174 (42%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
 Frame = -1

Query: 625 FGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQDMD 446
           F ++GLL  +    S+P L SLALG DLT LGL+LNS  NL  TFA PW + P +  +++
Sbjct: 387 FCLLGLLDVLN--RSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAK-SEVE 443

Query: 445 YHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHME 266
           + VP  Y    +    L      R+  +LLFY FY    D  Q+ AA ELY R W YH E
Sbjct: 444 FTVPNCYY--ATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKE 501

Query: 265 EKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKE-FHLDYSKLEGRPQL 107
            +VW  +  G P+V + +TYERGTY + D ++++ V KE F + Y  +E RP L
Sbjct: 502 LRVWFFRV-GEPLV-RAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL 553


>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
           Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
           (GI:1658504) [Drosophila melanogaster]
          Length = 444

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 51/116 (43%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
 Frame = -1

Query: 634 PNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQ 455
           P++FG++GLL+ I+   SDP L SLALG DLT LGLNLNS +NL+ TF  PW++ P +  
Sbjct: 337 PDRFGLLGLLSVIKM--SDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSK-V 393

Query: 454 DMDYHVPPEYLINGSIREKLAPLRLGRYKE---DLLFYLFYCFVGDVLQIAAAAEL 296
           D ++ VP  Y           PL  G + +   + LFY+FY    D  Q+ AA EL
Sbjct: 394 DPEFSVPQCYYAKNP-----PPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANEL 444


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
            family protein contains Pfam domain PF04153: NOT2 / NOT3
            / NOT5 family
          Length = 843

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
 Frame = -1

Query: 385  RLGR--YKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTS 212
            RLG   Y  D LF+ FY       Q  AA EL  + WRYH +   W  Q    P +  T 
Sbjct: 741  RLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWF-QRHKEPKI-ATD 798

Query: 211  TYERGTYYFFDAH---------NW-RKVPKEFHLDYSKLE 122
             YE+G Y +FD            W +++  EF  +YS LE
Sbjct: 799  EYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLE 838


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 468 GVSAHGPANVKLRLSGEFKFNPKAVKSCPNASDTRLGSDSAARIKVNRPTIPNW 629
           G+SA  P ++       FKFNP  V S P + D+ L     + +K     +PNW
Sbjct: 26  GISARAPKSL------HFKFNPSCVSSGPKSDDSPLSEKLISLLK----AVPNW 69


>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +1

Query: 118 DPPACCNPNETLSAPFSNCAHRRSSRCRVRTLKSSRPLA--CR-ALVRS----TPSPPYD 276
           D P C +P   +    + CAH     C ++TL+ S+PL   CR +L +S     P PP D
Sbjct: 615 DCPICISPPTNII--ITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPD 672

Query: 277 IAIRD 291
            +  D
Sbjct: 673 SSNTD 677


>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|O14981
            TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
            sapiens}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 2049

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 598  IRAAESDPSLVSLALGQDLTALGLNLNSPDNL 503
            ++A  SDP++  L L   +  LGLNL S D L
Sbjct: 1869 VKAFNSDPTIDVLLLTTHVGGLGLNLTSADTL 1900


>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 291

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 352 YLFYCF--VGDVLQIAAAAELYNREWRYHMEEKVW 254
           YL+ C+  +G+V       ++    W YH EE+ W
Sbjct: 172 YLYDCYRNIGNVWYTIVKGDISTSVWWYHSEEREW 206


>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
           acetohydroxy-acid synthase (ALS) nearly identical to
           SP|P17597 Acetolactate synthase, chloroplast precursor
           (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
           synthase) (ALS) {Arabidopsis thaliana}
          Length = 670

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 139 PNETLSAPFSNCAHRRSSRCRVRTLKSSRPLACRALVRST 258
           P    S PFS   ++ SS  R R +KSS P +  A++ +T
Sbjct: 30  PISRFSLPFSLNPNKSSSSSRRRGIKSSSPSSISAVLNTT 69


>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
           [Drosophila melanogaster] GI:7673675; expression
           supported by MPSS
          Length = 672

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 175 HNWRKVPKEFHLDYSKLEGRPQL 107
           H+W K  +EFH D SK+    +L
Sbjct: 202 HDWEKKEEEFHFDQSKVRSEIRL 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,933
Number of Sequences: 28952
Number of extensions: 334858
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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