BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M05 (822 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 347 2e-96 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 343 1e-95 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 144 1e-35 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 78 1e-15 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.007 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.35 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.60 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 1.1 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8 SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 4.3 SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.6 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.6 SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.4 SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.4 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.4 SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.8 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.8 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 347 bits (852), Expect = 2e-96 Identities = 152/189 (80%), Positives = 171/189 (90%) Frame = -1 Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 532 DL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G Sbjct: 255 DLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTG 314 Query: 531 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 352 +YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AK Sbjct: 315 RYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAK 374 Query: 351 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 172 V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+ Sbjct: 375 VNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 434 Query: 171 DYEEVGMDS 145 DYEEVG DS Sbjct: 435 DYEEVGQDS 443 Score = 29.1 bits (62), Expect = 0.80 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 770 IGQIVSSITAXLRFXGAXN 714 I Q+VSSITA LRF G+ N Sbjct: 235 IAQVVSSITASLRFAGSLN 253 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 343 bits (844), Expect = 1e-95 Identities = 152/189 (80%), Positives = 169/189 (89%) Frame = -1 Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 532 DL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G Sbjct: 251 DLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAG 310 Query: 531 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 352 +YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AK Sbjct: 311 RYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAK 370 Query: 351 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 172 V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+ Sbjct: 371 VDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430 Query: 171 DYEEVGMDS 145 DYEEVG DS Sbjct: 431 DYEEVGQDS 439 Score = 29.1 bits (62), Expect = 0.80 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 770 IGQIVSSITAXLRFXGAXN 714 I Q+VSSITA LRF G+ N Sbjct: 231 IAQVVSSITASLRFEGSLN 249 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 144 bits (349), Expect = 1e-35 Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 3/191 (1%) Frame = -1 Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 532 DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG Sbjct: 249 DLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHG 308 Query: 531 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 352 +Y+ L+RG V K+V+ I +++TK + FV+W P + PP DL Sbjct: 309 RYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL-- 361 Query: 351 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 181 + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + Sbjct: 362 -KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420 Query: 180 LEKDYEEVGMD 148 + Y+E G+D Sbjct: 421 EYQQYQEAGID 431 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 78.2 bits (184), Expect = 1e-15 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 7/190 (3%) Frame = -1 Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP 541 DL +L+P PR HF L +Y P + E + +V ++ P NQMV +P Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311 Query: 540 -RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 364 + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + Sbjct: 312 SKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNH 371 Query: 363 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEARE 193 ++ + ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ Sbjct: 372 RVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRD 426 Query: 192 DLAALEKDYE 163 +A L +YE Sbjct: 427 VVADLINEYE 436 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 35.9 bits (79), Expect = 0.007 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Frame = -2 Query: 713 GTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATP 540 GTS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TP Sbjct: 380 GTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTP 439 Query: 539 VMASTWLAVCCTVATSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 381 V ++ CT +TS P T + S P +N +T S TS P Sbjct: 440 VTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490 Score = 31.5 bits (68), Expect = 0.15 Identities = 29/105 (27%), Positives = 51/105 (48%) Frame = -2 Query: 701 SSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 522 S+ + + TPV++S++ T SS P T P + T+ ++ + +TPV ++ Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550 Query: 521 LAVCCTVATSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 387 CT +TS P T P S ++ S++ PV+ + TTS Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594 Score = 29.5 bits (63), Expect = 0.60 Identities = 27/107 (25%), Positives = 49/107 (45%) Frame = -2 Query: 707 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 528 +P+ T TP++T++ T +S+P T + +P + T+ ++ + +TPV ++ Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466 Query: 527 TWLAVCCTVATSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 387 CT +TS P T + S P +N +T S TS Sbjct: 467 PLTTTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511 Score = 25.4 bits (53), Expect = 9.8 Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 8/153 (5%) Frame = -2 Query: 668 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSY 489 STS S T SS P T S T S PPT ++ + + T +TS Sbjct: 94 STSSASTTGSSSSPLPSTSTS-----CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 148 Query: 488 PRM*TRPSLP---SKP----SVLSNSSTGVQPVSRSVS-TTSHPPWCPEATWPRFNVXXX 333 P T S S P S +ST + P S S +T P P + ++ Sbjct: 149 PIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIP 208 Query: 332 XXXXXXXXPKLGLALTTSSTSCTPSVLSCTGTS 234 L T+STSCT S TG S Sbjct: 209 PTSTSSTDTNSS-PLPTTSTSCTTSTSIPTGGS 240 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 30.3 bits (65), Expect = 0.35 Identities = 23/81 (28%), Positives = 42/81 (51%) Frame = -2 Query: 668 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSY 489 STS + T SS RP +S S +H SS ++ ++ PV ++ + + ++S+ Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435 Query: 488 PRM*TRPSLPSKPSVLSNSST 426 + SL SKP + ++SS+ Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 29.5 bits (63), Expect = 0.60 Identities = 23/89 (25%), Positives = 32/89 (35%) Frame = -2 Query: 635 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPRM*TRPSLPS 456 S+P+ P P S + P P + S V P + RP++P Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567 Query: 455 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 369 P LS V PV+ V + PP P Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 Score = 27.1 bits (57), Expect = 3.2 Identities = 24/90 (26%), Positives = 32/90 (35%) Frame = -2 Query: 635 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPRM*TRPSLPS 456 S+P+RP + P S P P + +A A S P+ P P Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615 Query: 455 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 366 PSV + V P + SV P PE Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 28.7 bits (61), Expect = 1.1 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = +1 Query: 463 SDGRVHILGYDVATVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 642 S G +LGY ++ A++V+A + V HL+ G D + K G D Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459 Query: 643 RVRDQWEVDTGVR 681 R Q+E++ G++ Sbjct: 460 VDRVQYELEAGLQ 472 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -1 Query: 591 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 466 + ACFEP N C H K C L + KD N ++ Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 28.3 bits (60), Expect = 1.4 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -2 Query: 299 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 126 G+ TS TS T S S++ S+P P W P+ S+ TP+ V Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207 Query: 125 EPKSTK 108 EP+ TK Sbjct: 208 EPRFTK 213 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 27.9 bits (59), Expect = 1.8 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -2 Query: 704 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 558 P+++ P S + T +SS+P P N+ PSP S + AS+ P R Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279 >SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces pombe|chr 2|||Manual Length = 476 Score = 26.6 bits (56), Expect = 4.3 Identities = 27/95 (28%), Positives = 36/95 (37%) Frame = -2 Query: 662 SHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPR 483 SH ++ Q S P ++ PS S T + P +P + + A PR Sbjct: 242 SHQPQSTQFSPPANDNISKLPS--SFTIVNDPLK-----SPSSSRLRIRNITLCADKIPR 294 Query: 482 M*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 378 LP K VL T + VSR TTS P Sbjct: 295 PLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329 >SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1158 Score = 26.2 bits (55), Expect = 5.6 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 641 QSSLPRRPTMNSFPSPRSQTHASSPPTR 558 + SLPRRP+ +P S T ++ PP + Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 5.6 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 467 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 381 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 751 Score = 25.8 bits (54), Expect = 7.4 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -2 Query: 707 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 567 SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664 >SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 474 Score = 25.8 bits (54), Expect = 7.4 Identities = 16/51 (31%), Positives = 31/51 (60%) Frame = -2 Query: 680 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 528 LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++ Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.8 bits (54), Expect = 7.4 Identities = 22/84 (26%), Positives = 36/84 (42%) Frame = -2 Query: 674 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVAT 495 P+ SH S + S+ R + + H S PT+ +AT + S AV T Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312 Query: 494 SYPRM*TRPSLPSKPSVLSNSSTG 423 + P + P S P + S +++G Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335 >SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces pombe|chr 1|||Manual Length = 665 Score = 25.4 bits (53), Expect = 9.8 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = -2 Query: 470 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 375 P PS+P+++SN ST G+Q V V + W Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 25.4 bits (53), Expect = 9.8 Identities = 36/139 (25%), Positives = 53/139 (38%) Frame = -2 Query: 620 PTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPRM*TRPSLPSKPSVL 441 PT S P PR T S+ R PV+ + AT M P+ SKP+ + Sbjct: 964 PTSKSKPFPRLATGGSTAAAR--GPRPVVQNK------PAATKPVSM---PAAKSKPAPM 1012 Query: 440 SNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXXXXPKLGLALTTSSTSCTP 261 +N PVS + T + PP A R N + A T S++ P Sbjct: 1013 AN------PVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAP 1064 Query: 260 SVLSCTGTSVRVWRRESSP 204 S ++ +S + S+P Sbjct: 1065 STVTSAASSPSNISKPSAP 1083 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,107,195 Number of Sequences: 5004 Number of extensions: 67594 Number of successful extensions: 252 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 248 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 402440190 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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