Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M05
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 347 2e-96
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 343 1e-95
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 144 1e-35
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 78 1e-15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.007
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.35
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.60
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 1.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 4.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.6
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.4
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 347 bits (852), Expect = 2e-96
Identities = 152/189 (80%), Positives = 171/189 (90%)
Frame = -1
Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 532
DL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G
Sbjct: 255 DLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTG 314
Query: 531 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 352
+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AK
Sbjct: 315 RYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAK 374
Query: 351 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 172
V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 375 VNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 434
Query: 171 DYEEVGMDS 145
DYEEVG DS
Sbjct: 435 DYEEVGQDS 443
Score = 29.1 bits (62), Expect = 0.80
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 770 IGQIVSSITAXLRFXGAXN 714
I Q+VSSITA LRF G+ N
Sbjct: 235 IAQVVSSITASLRFAGSLN 253
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 343 bits (844), Expect = 1e-95
Identities = 152/189 (80%), Positives = 169/189 (89%)
Frame = -1
Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 532
DL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G
Sbjct: 251 DLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAG 310
Query: 531 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 352
+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AK
Sbjct: 311 RYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAK 370
Query: 351 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 172
V RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+
Sbjct: 371 VDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALER 430
Query: 171 DYEEVGMDS 145
DYEEVG DS
Sbjct: 431 DYEEVGQDS 439
Score = 29.1 bits (62), Expect = 0.80
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 770 IGQIVSSITAXLRFXGAXN 714
I Q+VSSITA LRF G+ N
Sbjct: 231 IAQVVSSITASLRFEGSLN 249
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 144 bits (349), Expect = 1e-35
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Frame = -1
Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHG 532
DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG
Sbjct: 249 DLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHG 308
Query: 531 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 352
+Y+ L+RG V K+V+ I +++TK + FV+W P + PP DL
Sbjct: 309 RYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL-- 361
Query: 351 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAA 181
+ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL +
Sbjct: 362 -KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 180 LEKDYEEVGMD 148
+ Y+E G+D
Sbjct: 421 EYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 78.2 bits (184), Expect = 1e-15
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 7/190 (3%)
Frame = -1
Query: 711 DLTEFQTNLVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP 541
DL +L+P PR HF L +Y P + E + +V ++ P NQMV +P
Sbjct: 252 DLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
Query: 540 -RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 364
+ +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 312 SKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNH 371
Query: 363 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEARE 193
++ + ML+N T+IA + R ++D + + AF+ Y E + E EF +R+
Sbjct: 372 RVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRD 426
Query: 192 DLAALEKDYE 163
+A L +YE
Sbjct: 427 VVADLINEYE 436
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.9 bits (79), Expect = 0.007
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -2
Query: 713 GTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATP 540
GTS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TP
Sbjct: 380 GTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTP 439
Query: 539 VMASTWLAVCCTVATSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 381
V ++ CT +TS P T + S P +N +T S TS P
Sbjct: 440 VTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 31.5 bits (68), Expect = 0.15
Identities = 29/105 (27%), Positives = 51/105 (48%)
Frame = -2
Query: 701 SSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 522
S+ + + TPV++S++ T SS P T P + T+ ++ + +TPV ++
Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550
Query: 521 LAVCCTVATSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 387
CT +TS P T P S ++ S++ PV+ + TTS
Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 29.5 bits (63), Expect = 0.60
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = -2
Query: 707 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 528
+P+ T TP++T++ T +S+P T + +P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466
Query: 527 TWLAVCCTVATSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 387
CT +TS P T + S P +N +T S TS
Sbjct: 467 PLTTTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 25.4 bits (53), Expect = 9.8
Identities = 43/153 (28%), Positives = 55/153 (35%), Gaps = 8/153 (5%)
Frame = -2
Query: 668 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSY 489
STS S T SS P T S T S PPT ++ + + T +TS
Sbjct: 94 STSSASTTGSSSSPLPSTSTS-----CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 148
Query: 488 PRM*TRPSLP---SKP----SVLSNSSTGVQPVSRSVS-TTSHPPWCPEATWPRFNVXXX 333
P T S S P S +ST + P S S +T P P + ++
Sbjct: 149 PIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIP 208
Query: 332 XXXXXXXXPKLGLALTTSSTSCTPSVLSCTGTS 234
L T+STSCT S TG S
Sbjct: 209 PTSTSSTDTNSS-PLPTTSTSCTTSTSIPTGGS 240
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -2
Query: 668 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSY 489
STS + T SS RP +S S +H SS ++ ++ PV ++ + + ++S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 488 PRM*TRPSLPSKPSVLSNSST 426
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.5 bits (63), Expect = 0.60
Identities = 23/89 (25%), Positives = 32/89 (35%)
Frame = -2
Query: 635 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPRM*TRPSLPS 456
S+P+ P P S + P P + S V P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 455 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 369
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/90 (26%), Positives = 32/90 (35%)
Frame = -2
Query: 635 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPRM*TRPSLPS 456
S+P+RP + P S P P + +A A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 455 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 366
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 463 SDGRVHILGYDVATVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 642
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 643 RVRDQWEVDTGVR 681
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 591 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 466
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 299 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 126
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 125 EPKSTK 108
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 704 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 558
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 4.3
Identities = 27/95 (28%), Positives = 36/95 (37%)
Frame = -2
Query: 662 SHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPR 483
SH ++ Q S P ++ PS S T + P +P + + A PR
Sbjct: 242 SHQPQSTQFSPPANDNISKLPS--SFTIVNDPLK-----SPSSSRLRIRNITLCADKIPR 294
Query: 482 M*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 378
LP K VL T + VSR TTS P
Sbjct: 295 PLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 641 QSSLPRRPTMNSFPSPRSQTHASSPPTR 558
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 467 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 381
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 707 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 567
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -2
Query: 680 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 528
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -2
Query: 674 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVAT 495
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 494 SYPRM*TRPSLPSKPSVLSNSSTG 423
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 470 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 375
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 9.8
Identities = 36/139 (25%), Positives = 53/139 (38%)
Frame = -2
Query: 620 PTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVATSYPRM*TRPSLPSKPSVL 441
PT S P PR T S+ R PV+ + AT M P+ SKP+ +
Sbjct: 964 PTSKSKPFPRLATGGSTAAAR--GPRPVVQNK------PAATKPVSM---PAAKSKPAPM 1012
Query: 440 SNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXXXXXXXXPKLGLALTTSSTSCTP 261
+N PVS + T + PP A R N + A T S++ P
Sbjct: 1013 AN------PVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAP 1064
Query: 260 SVLSCTGTSVRVWRRESSP 204
S ++ +S + S+P
Sbjct: 1065 STVTSAASSPSNISKPSAP 1083
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,195
Number of Sequences: 5004
Number of extensions: 67594
Number of successful extensions: 252
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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