Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M04
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   260   1e-70
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   256   3e-69
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   103   2e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    59   9e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.27 
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    28   1.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   2.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   7.6  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  260 bits (638), Expect = 1e-70
 Identities = 114/142 (80%), Positives = 129/142 (90%)
 Frame = -2

Query: 556 PPNQMVKCDSRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 377
           P NQMVKCD R G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361

Query: 376 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 197
           +PP  VPG  +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 362 EPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 421

Query: 196 FSEAREDLAALEKDYEEVGMDS 131
           FSEAREDLAALE+DYEEVG DS
Sbjct: 422 FSEAREDLAALERDYEEVGQDS 443



 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = -1

Query: 713 GALNXDLTEFQXNXCLTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 555
           G+LN DL EFQ N    PRIHFPLVTY+P++SA KA+HE  SV EITN CFEP
Sbjct: 250 GSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  256 bits (627), Expect = 3e-69
 Identities = 113/142 (79%), Positives = 127/142 (89%)
 Frame = -2

Query: 556 PPNQMVKCDSRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 377
           P NQMVKCD R G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI  
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357

Query: 376 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 197
           +PP  + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 RPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 417

Query: 196 FSEAREDLAALEKDYEEVGMDS 131
           FSEAREDLAALE+DYEEVG DS
Sbjct: 418 FSEAREDLAALERDYEEVGQDS 439



 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = -1

Query: 716 DGALNXDLTEFQXNXCLTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 555
           +G+LN DL EFQ N    PRIHFPLVTYAP++SA KA+HE  SV EITN CFEP
Sbjct: 245 EGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  103 bits (248), Expect = 2e-23
 Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
 Frame = -2

Query: 550 NQMVKCDSRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 371
           N MV  D RHG+Y+    L+RG V  K+V+  I +++TK +  FV+W P      +   P
Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357

Query: 370 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 191
           P      DL   + +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFT 409

Query: 190 EAR---EDLAALEKDYEEVGMD 134
           EA     DL +  + Y+E G+D
Sbjct: 410 EAESNMNDLVSEYQQYQEAGID 431



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 713 GALNXDLTEFQXNXCLTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 558
           G LN DL +   N    PR+HF +V +AP+ +   +  + +SV E+T   F+
Sbjct: 244 GELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
 Frame = -2

Query: 556 PPNQMVKCD-SRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 380
           P NQMV  + S+   +++   + +G+  P DV+ ++  I+ +R   F+ W P   +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361

Query: 379 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 203
            + P +     ++ +     ML+N T+IA  + R   ++D +  + AF+  Y  E + E 
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416

Query: 202 --GEFSEAREDLAALEKDYE 149
              EF  +R+ +A L  +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 713 GALNXDLTEFQXNXCLTPRIHFPLVTYAP 627
           G +N DL     +   +PR HF L +Y P
Sbjct: 247 GYMNNDLVSIIASLIPSPRCHFLLTSYTP 275


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 489 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 355
           VV   P +  RP++P  P  LS     V PV+  V +   PP  P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112
           G+   TS TS T S       S++     S+P P   W P+        S+ TP+   V 
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207

Query: 111 EPKSTK 94
           EP+ TK
Sbjct: 208 EPRFTK 213


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 590 SVAEITNACFEPAKPDGEMRLPSWQV 513
           SV ++T ACFEP+     +++P W +
Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 691 PSSRXTXALPPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPNQMVK 536
           P++      PP + S  S    SS+    + +S PSP S + A   PNQ +K
Sbjct: 276 PATPSQPPRPPTNASTRSTGTSSSMAH--SYDSPPSPSSPSDAYGDPNQHLK 325


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -3

Query: 453 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 367
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -2

Query: 529 SRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 350
           S+  ++ +    Y  +   KDVN  +       TI   +W PTG ++   Y     V   
Sbjct: 138 SQRWRHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKN 196

Query: 349 DLAKVQR 329
           D   VQR
Sbjct: 197 D-GNVQR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,174
Number of Sequences: 5004
Number of extensions: 64027
Number of successful extensions: 254
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)