BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M04 (836 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 260 1e-70 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 256 3e-69 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 103 2e-23 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 59 9e-10 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.27 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.4 SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.5 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.8 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.8 SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 7.6 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 260 bits (638), Expect = 1e-70 Identities = 114/142 (80%), Positives = 129/142 (90%) Frame = -2 Query: 556 PPNQMVKCDSRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 377 P NQMVKCD R G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361 Query: 376 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 197 +PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGE Sbjct: 362 EPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 421 Query: 196 FSEAREDLAALEKDYEEVGMDS 131 FSEAREDLAALE+DYEEVG DS Sbjct: 422 FSEAREDLAALERDYEEVGQDS 443 Score = 81.8 bits (193), Expect = 1e-16 Identities = 36/53 (67%), Positives = 41/53 (77%) Frame = -1 Query: 713 GALNXDLTEFQXNXCLTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 555 G+LN DL EFQ N PRIHFPLVTY+P++SA KA+HE SV EITN CFEP Sbjct: 250 GSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 256 bits (627), Expect = 3e-69 Identities = 113/142 (79%), Positives = 127/142 (89%) Frame = -2 Query: 556 PPNQMVKCDSRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 377 P NQMVKCD R G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357 Query: 376 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 197 +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGE Sbjct: 358 RPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 417 Query: 196 FSEAREDLAALEKDYEEVGMDS 131 FSEAREDLAALE+DYEEVG DS Sbjct: 418 FSEAREDLAALERDYEEVGQDS 439 Score = 83.8 bits (198), Expect = 3e-17 Identities = 37/54 (68%), Positives = 42/54 (77%) Frame = -1 Query: 716 DGALNXDLTEFQXNXCLTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 555 +G+LN DL EFQ N PRIHFPLVTYAP++SA KA+HE SV EITN CFEP Sbjct: 245 EGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 103 bits (248), Expect = 2e-23 Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 3/142 (2%) Frame = -2 Query: 550 NQMVKCDSRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 371 N MV D RHG+Y+ L+RG V K+V+ I +++TK + FV+W P + P Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357 Query: 370 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 191 P DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+ Sbjct: 358 PK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFT 409 Query: 190 EAR---EDLAALEKDYEEVGMD 134 EA DL + + Y+E G+D Sbjct: 410 EAESNMNDLVSEYQQYQEAGID 431 Score = 38.7 bits (86), Expect = 0.001 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = -1 Query: 713 GALNXDLTEFQXNXCLTPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 558 G LN DL + N PR+HF +V +AP+ + + + +SV E+T F+ Sbjct: 244 GELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 58.8 bits (136), Expect = 9e-10 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 4/140 (2%) Frame = -2 Query: 556 PPNQMVKCD-SRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 380 P NQMV + S+ +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361 Query: 379 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 203 + P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416 Query: 202 --GEFSEAREDLAALEKDYE 149 EF +R+ +A L +YE Sbjct: 417 DLNEFDSSRDVVADLINEYE 436 Score = 26.2 bits (55), Expect = 5.8 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 713 GALNXDLTEFQXNXCLTPRIHFPLVTYAP 627 G +N DL + +PR HF L +Y P Sbjct: 247 GYMNNDLVSIIASLIPSPRCHFLLTSYTP 275 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 30.7 bits (66), Expect = 0.27 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -3 Query: 489 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 355 VV P + RP++P P LS V PV+ V + PP P Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 28.3 bits (60), Expect = 1.4 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -3 Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112 G+ TS TS T S S++ S+P P W P+ S+ TP+ V Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207 Query: 111 EPKSTK 94 EP+ TK Sbjct: 208 EPRFTK 213 >SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 2244 Score = 27.5 bits (58), Expect = 2.5 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 590 SVAEITNACFEPAKPDGEMRLPSWQV 513 SV ++T ACFEP+ +++P W + Sbjct: 800 SVTKVTCACFEPSLDYVVVKIPRWDL 825 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 26.2 bits (55), Expect = 5.8 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -2 Query: 691 PSSRXTXALPPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPNQMVK 536 P++ PP + S S SS+ + +S PSP S + A PNQ +K Sbjct: 276 PATPSQPPRPPTNASTRSTGTSSSMAH--SYDSPPSPSSPSDAYGDPNQHLK 325 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 5.8 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -3 Query: 453 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 367 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 793 Score = 25.8 bits (54), Expect = 7.6 Identities = 18/67 (26%), Positives = 27/67 (40%) Frame = -2 Query: 529 SRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 350 S+ ++ + Y + KDVN + TI +W PTG ++ Y V Sbjct: 138 SQRWRHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKN 196 Query: 349 DLAKVQR 329 D VQR Sbjct: 197 D-GNVQR 202 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,087,174 Number of Sequences: 5004 Number of extensions: 64027 Number of successful extensions: 254 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 223 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 253 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 412451140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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