BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M03 (790 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 210 1e-55 SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 210 1e-55 SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 210 1e-55 SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 76 5e-15 SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 40 5e-04 SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 7.1 SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 9.4 >SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual Length = 460 Score = 210 bits (514), Expect = 1e-55 Identities = 96/132 (72%), Positives = 111/132 (84%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K SVK++RRG V GDS N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 CKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDM Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427 Query: 360 RQTVAVGVIKAV 325 RQTVAVGVIKAV Sbjct: 428 RQTVAVGVIKAV 439 >SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual Length = 460 Score = 210 bits (514), Expect = 1e-55 Identities = 96/132 (72%), Positives = 111/132 (84%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K SVK++RRG V GDS N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 CKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDM Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427 Query: 360 RQTVAVGVIKAV 325 RQTVAVGVIKAV Sbjct: 428 RQTVAVGVIKAV 439 >SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 210 bits (514), Expect = 1e-55 Identities = 96/132 (72%), Positives = 111/132 (84%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K SVK++RRG V GDS N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 CKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDM Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427 Query: 360 RQTVAVGVIKAV 325 RQTVAVGVIKAV Sbjct: 428 RQTVAVGVIKAV 439 >SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 76.2 bits (179), Expect = 5e-15 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Frame = -2 Query: 693 ELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK 514 +++ GYV S NP F AQ+ +L P ++ GY+ V+ HTA FA++ K Sbjct: 540 DVQTGYVL-TSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHK 598 Query: 513 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 337 +D+ T + ++ P G I L P+C+E F+++ +GRF +RD TVAVG V Sbjct: 599 LDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKV 657 Query: 336 IKAVN 322 +K ++ Sbjct: 658 VKILD 662 >SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 592 Score = 39.5 bits (88), Expect = 5e-04 Identities = 37/129 (28%), Positives = 56/129 (43%) Frame = -2 Query: 717 QRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 538 Q + V +LR G + + NP + F A++ + G I +G T VL H+ Sbjct: 470 QLADIEVNQLRPGDILSN-YENPVRRVRSFVAEIQTFDIHGPILSGSTLVL-----HLGR 523 Query: 537 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 358 + K+ K + + S K I L PLC+ +E P LGRF +R Sbjct: 524 TVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPALGRFILRRSG 580 Query: 357 QTVAVGVIK 331 TVA G++K Sbjct: 581 DTVAAGIVK 589 >SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 25.8 bits (54), Expect = 7.1 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +2 Query: 281 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTKLTMAA 454 S +VTLPPPAS ++ T T T + S ++ G+ + +++ + ++++ Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241 Query: 455 SPDLMDFGLTSVDLPVRRSTFSLIS 529 S L +TS PV S+ SL S Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266 >SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 268 Score = 25.4 bits (53), Expect = 9.4 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 446 MAASPDLMDFGLTSVDLPVRRSTFS 520 ++ +PDL D L+SVD P++ +T S Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,943,685 Number of Sequences: 5004 Number of extensions: 57211 Number of successful extensions: 161 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 160 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 383374054 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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