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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M03
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   210   1e-55
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   210   1e-55
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   210   1e-55
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    76   5e-15
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    40   5e-04
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   7.1  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   9.4  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  210 bits (514), Expect = 1e-55
 Identities = 96/132 (72%), Positives = 111/132 (84%)
 Frame = -2

Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541
           F  K  SVK++RRG V GDS N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367

Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361
           CKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427

Query: 360 RQTVAVGVIKAV 325
           RQTVAVGVIKAV
Sbjct: 428 RQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  210 bits (514), Expect = 1e-55
 Identities = 96/132 (72%), Positives = 111/132 (84%)
 Frame = -2

Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541
           F  K  SVK++RRG V GDS N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367

Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361
           CKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427

Query: 360 RQTVAVGVIKAV 325
           RQTVAVGVIKAV
Sbjct: 428 RQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  210 bits (514), Expect = 1e-55
 Identities = 96/132 (72%), Positives = 111/132 (84%)
 Frame = -2

Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541
           F  K  SVK++RRG V GDS N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367

Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361
           CKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427

Query: 360 RQTVAVGVIKAV 325
           RQTVAVGVIKAV
Sbjct: 428 RQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
 Frame = -2

Query: 693 ELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK 514
           +++ GYV   S  NP      F AQ+ +L  P  ++ GY+ V+  HTA     FA++  K
Sbjct: 540 DVQTGYVL-TSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHK 598

Query: 513 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 337
           +D+ T + ++  P     G   I  L    P+C+E F+++  +GRF +RD   TVAVG V
Sbjct: 599 LDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKV 657

Query: 336 IKAVN 322
           +K ++
Sbjct: 658 VKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 37/129 (28%), Positives = 56/129 (43%)
 Frame = -2

Query: 717 QRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 538
           Q  +  V +LR G +  +   NP +    F A++   +  G I +G T VL     H+  
Sbjct: 470 QLADIEVNQLRPGDILSN-YENPVRRVRSFVAEIQTFDIHGPILSGSTLVL-----HLGR 523

Query: 537 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 358
               +  K+     K +  +  S K     I  L    PLC+   +E P LGRF +R   
Sbjct: 524 TVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPALGRFILRRSG 580

Query: 357 QTVAVGVIK 331
            TVA G++K
Sbjct: 581 DTVAAGIVK 589


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 281 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTKLTMAA 454
           S  +VTLPPPAS   ++  T T T  + S ++     G+ + +++        +  ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241

Query: 455 SPDLMDFGLTSVDLPVRRSTFSLIS 529
           S  L    +TS   PV  S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 446 MAASPDLMDFGLTSVDLPVRRSTFS 520
           ++ +PDL D  L+SVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,685
Number of Sequences: 5004
Number of extensions: 57211
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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