Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M03
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 204 4e-53
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 204 4e-53
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 204 4e-53
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.6
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.6
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 204 bits (499), Expect = 4e-53
Identities = 96/132 (72%), Positives = 108/132 (81%)
Frame = -2
Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541
F K SVK++RRG V DS +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 276 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 335
Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 336 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 395
Query: 360 RQTVAVGVIKAV 325
RQTVAVGVIK+V
Sbjct: 396 RQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 204 bits (499), Expect = 4e-53
Identities = 96/132 (72%), Positives = 108/132 (81%)
Frame = -2
Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541
F K SVK++RRG V DS +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 360 RQTVAVGVIKAV 325
RQTVAVGVIK+V
Sbjct: 430 RQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 204 bits (499), Expect = 4e-53
Identities = 96/132 (72%), Positives = 108/132 (81%)
Frame = -2
Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541
F K SVK++RRG V DS +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 360 RQTVAVGVIKAV 325
RQTVAVGVIK+V
Sbjct: 430 RQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 70.1 bits (164), Expect = 2e-12
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Frame = -2
Query: 723 RFQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 544
+F+ K EL+ G++ S ++ K F A+V+VL H I++GY+ VL +A
Sbjct: 401 KFKLKGIEENELQGGFIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVE 459
Query: 543 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 364
+ +D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD
Sbjct: 460 EVTVKGVIATIDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRD 517
Query: 363 MRQTVAVG-VIKAV 325
+T+A+G V+K V
Sbjct: 518 EGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 630 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 451
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 450 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 325
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 630 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 451
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 450 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 325
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 209 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 364
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 263 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 415
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 567 LDCHTAHIACKFAEIKEKVDRRTGKSTE 484
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 567 LDCHTAHIACKFAEIKEKVDRRTGKSTE 484
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 567 LDCHTAHIACKFAEIKEKVDRRTGKSTE 484
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,471,911
Number of Sequences: 27780
Number of extensions: 333912
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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