BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_M03 (790 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 196 1e-50 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 196 1e-50 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 196 1e-50 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 196 1e-50 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 141 5e-34 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 70 2e-12 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 52 6e-07 At4g27900.2 68417.m04005 expressed protein 32 0.50 At4g27900.1 68417.m04004 expressed protein 32 0.50 At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 6.1 At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 28 8.1 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 196 bits (478), Expect = 1e-50 Identities = 87/133 (65%), Positives = 111/133 (83%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K +VK+L+RGYVA +S ++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDM Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDM 417 Query: 360 RQTVAVGVIKAVN 322 RQTVAVGVIK+V+ Sbjct: 418 RQTVAVGVIKSVD 430 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 196 bits (478), Expect = 1e-50 Identities = 87/133 (65%), Positives = 111/133 (83%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K +VK+L+RGYVA +S ++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDM Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDM 417 Query: 360 RQTVAVGVIKAVN 322 RQTVAVGVIK+V+ Sbjct: 418 RQTVAVGVIKSVD 430 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 196 bits (478), Expect = 1e-50 Identities = 87/133 (65%), Positives = 111/133 (83%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K +VK+L+RGYVA +S ++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDM Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDM 417 Query: 360 RQTVAVGVIKAVN 322 RQTVAVGVIK+V+ Sbjct: 418 RQTVAVGVIKSVD 430 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 196 bits (478), Expect = 1e-50 Identities = 87/133 (65%), Positives = 111/133 (83%) Frame = -2 Query: 720 FQRKERSVKELRRGYVAGDSXNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 541 F K +VK+L+RGYVA +S ++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357 Query: 540 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 361 KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDM Sbjct: 358 VKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDM 417 Query: 360 RQTVAVGVIKAVN 322 RQTVAVGVIK+V+ Sbjct: 418 RQTVAVGVIKSVD 430 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 141 bits (341), Expect = 5e-34 Identities = 61/95 (64%), Positives = 77/95 (81%) Frame = -2 Query: 609 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 430 +NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60 Query: 429 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 325 +KP+ VE++ +PPLGRFA+RDMRQTV VGVIK+V Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 70.1 bits (164), Expect = 2e-12 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Frame = -2 Query: 696 KELRRGYVAGDSXNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEI 523 +++ G+V S NP +F AQ+ +L + GY +L H C+ E+ Sbjct: 401 EDILSGFVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIEL 459 Query: 522 KEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 343 K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R +T+AV Sbjct: 460 KSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAV 519 Query: 342 GVI 334 G + Sbjct: 520 GKV 522 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 51.6 bits (118), Expect = 6e-07 Identities = 30/109 (27%), Positives = 52/109 (47%) Frame = -2 Query: 651 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 472 P A V+VL I G H A A ++ +D +TG+ T+ +P+ Sbjct: 555 PVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPR 614 Query: 471 SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 325 + + +A++ + P+CVE+F E LGR +R +TVA+G + + Sbjct: 615 CLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKVTRI 663 >At4g27900.2 68417.m04005 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.50 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -2 Query: 477 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 385 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At4g27900.1 68417.m04004 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.50 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = -2 Query: 477 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 385 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 536 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 537 KFAEIKEKVDRRTGKSTEVNPKSI 466 +F + KEK+DR GK E+N K + Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281 >At2g04740.1 68415.m00484 ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023 Length = 578 Score = 27.9 bits (59), Expect = 8.1 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +2 Query: 170 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 346 +C L + + +K R C+ A N + F+ F A L+TLPPP+ P+ Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511 Query: 347 ATVCLMS 367 A +M+ Sbjct: 512 APGAMMT 518 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,535,927 Number of Sequences: 28952 Number of extensions: 307975 Number of successful extensions: 848 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 848 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1775300800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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