Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M02
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 33   0.21 
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    33   0.28 
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_38412| Best HMM Match : DUF733 (HMM E-Value=8.1)                    30   1.9  
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 30   1.9  
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)                     29   4.5  
SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)                  29   4.5  
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      29   5.9  
SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_23619| Best HMM Match : TPR_1 (HMM E-Value=5.6)                     29   5.9  
SB_18223| Best HMM Match : TPR_1 (HMM E-Value=0.11)                    29   5.9  
SB_27117| Best HMM Match : SAM_1 (HMM E-Value=6.3e-07)                 29   5.9  
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_12147| Best HMM Match : QRPTase_C (HMM E-Value=0)                   29   5.9  
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_58596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 467  HFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDF 324
            H K G + +  +  NKAL ID  N++ L  RG    N   ++K+ EDF
Sbjct: 1028 HLKLGNNFKCIKACNKALDIDKENIKALFRRGKALLNLKDYEKSKEDF 1075


>SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 467 HFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFE 321
           H K G   EA +  N ALSID  +V+ L  R   Y     + +A+ DF+
Sbjct: 130 HLKLGFSQEAIKECNAALSIDENDVDALCDRAEAYILEEMYNEAVNDFQ 178


>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 592

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 536 YADELRQAQASKWAFRS-VAEGIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYA 360
           Y D+  Q +  K +F + +AEG   FK   + +A    + AL + P +   LVAR   Y 
Sbjct: 2   YEDDEEQEEGPKSSFSTYLAEGDVLFKQEEYQKALDSYSLALELKPTDPFCLVARSKCYL 61

Query: 359 NSGTFKKAIEDFE 321
             G    A  D E
Sbjct: 62  KLGKNDAAYRDAE 74


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
 Frame = -1

Query: 364 TPIVEHS-KRP*KILRPXLKLNPNHANARKYLGETLVALGRSYEDENQITEAQ----KAY 200
           TP +E S K   K+ +  L  N    +++K    T  +L +  E+E    E Q    K Y
Sbjct: 8   TPAIEESRKNTHKLSKKLLSANSTTTHSKKISKAT--SLKKKQEEERAAKERQEKLLKLY 65

Query: 199 EDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELLLPGLTGAKSYEMKETLKQLLNLT 20
           E    +   HEE ++   +LK K T    LI+  + L   +  ++ ++ ++ +K+   L 
Sbjct: 66  ELWHQVK--HEEREDRHGYLKDKVTLQHALIQQQDELCK-VKQSRLHKQQQQIKKTQLLA 122

Query: 19  RKKKKK 2
           R+++ K
Sbjct: 123 RQERNK 128


>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 354 TIGVQCSSSNKTLYISRIYAQSFIQALKCFRMSSSFKMFNAFC 482
           T G+Q  S  KT++   + +  F+ A  C  ++  F  +N +C
Sbjct: 103 TAGLQAKSFFKTVFNQHLKSNVFVTAFDCSNVAKLFVDYNVYC 145


>SB_38412| Best HMM Match : DUF733 (HMM E-Value=8.1)
          Length = 280

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 488 SVAEGIEHFKAGRHSEAFQCLNKALSI 408
           +++ G EH   GRH E F  LNKAL +
Sbjct: 247 TISTGAEHPSHGRHQEFFNELNKALDL 273


>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 503

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 455 GRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFE 321
           G + +A  C N+AL  +P +   L  R A+    G  KKA+E ++
Sbjct: 54  GNYKQALACYNQALKHNPDDPTILWERAAVCYQMGDVKKALEYYQ 98


>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 626 CIQFLSEHLGIANMHCTNFSYLRGRFASSEYADELRQAQASK--WAFRSVAEGIEHFKAG 453
           C Q  S  L + +    N  Y      +  Y  E R  +  K  W+F++ +   EH KA 
Sbjct: 98  CSQMFSNPLALQDTRFLNLMY------TMHYNGEKRPFKCDKCWWSFKNPSGLREHIKAV 151

Query: 452 RHSEAFQC 429
            +SE F+C
Sbjct: 152 HNSEKFKC 159


>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
          Length = 1312

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 166  EAQNSLDFLKSKTTASKPLIEPAELLLPGLTGAKSYEMKETLKQLLNLTRKKKKK 2
            E Q  L  L      S P++   ++  PGL G K Y+ +  L +  NLT + + +
Sbjct: 989  ERQADLIALLETKNNSIPVVSDLDIQAPGLLGQKQYQEQLNLLEQRNLTLQARNE 1043


>SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)
          Length = 363

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 166 EAQNSLDFLKSKTTASKPLIEPAELLLPGLTGAKSYEMKETLKQLLNLTRKKKKK 2
           E Q  L  L      S P++   ++  PGL G K Y+ +  L +  NLT + + +
Sbjct: 269 ERQADLIALLETKNNSIPVVSDLDIQAPGLLGQKQYQEQLNLLEQRNLTLQARNE 323


>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 354 TIGVQCSSSNKTLYISRIYAQSFIQALK 437
           + GV   S  K+LYI R Y   +I ALK
Sbjct: 46  SFGVPSESKEKSLYIKRSYIDLYINALK 73


>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 479 EGIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGAL 366
           +G+E  +AG    A  C NKA+ + P    G   R  L
Sbjct: 52  QGVEKAEAGDFVGALDCFNKAIDVAPLRASGYNNRAQL 89


>SB_23619| Best HMM Match : TPR_1 (HMM E-Value=5.6)
          Length = 71

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 229 NQITEAQKAYEDCLAIIPFHEEAQN 155
           N++ EA  AY+D L I PF  EA N
Sbjct: 3   NKLEEAVAAYDDALKIDPFFVEAYN 27


>SB_18223| Best HMM Match : TPR_1 (HMM E-Value=0.11)
          Length = 96

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 479 EGIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGAL 366
           +G+E  +AG    A  C NKA+ + P    G   R  L
Sbjct: 52  QGVEKAEAGDFVGALDCFNKAIDVAPLRASGYNNRAQL 89


>SB_27117| Best HMM Match : SAM_1 (HMM E-Value=6.3e-07)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 515 AQASKWAFRSVAEGIEHFKAGRHSEAFQ 432
           +Q  +W    VA  + H K G+++EAF+
Sbjct: 296 SQMEEWTVNDVANHLVHIKLGKYAEAFK 323


>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 422 KALSIDPRNVEGLVARGALYANSGTFKKAIEDF 324
           +AL IDP +VE +   G+++  +G  +KA+  F
Sbjct: 85  RALEIDPDHVEAIEMAGSVFLETGQPEKAVNCF 117


>SB_12147| Best HMM Match : QRPTase_C (HMM E-Value=0)
          Length = 306

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 704 TKKTMDMKGENYEAILEKSPGFNNPNCIQFLSEHLGIANMHCTNFSY 564
           T KT+  KG+    I+E S G N+ +  Q+   H+ + ++ C    Y
Sbjct: 236 TAKTL--KGKCAGVIIEASGGINDSSIAQYFGPHVDVISLGCLTQGY 280


>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 467 HFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFE 321
           + K   +  A    NKA+ +D + ++G   R       G FK +++D+E
Sbjct: 231 YLKTEYYGLALADANKAIQLDRKYIKGYYRRATANMALGKFKLSLKDYE 279


>SB_58596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 563 LRGRFASSEYADELRQAQASKWAFRSVAEGIEHFKAGRHS 444
           + GR   S    +  +A+   W F  + E I H+++G+H+
Sbjct: 92  IMGRSRPSIKLTDFLRAEIEYWRFIDIGESILHWRSGKHA 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,942,032
Number of Sequences: 59808
Number of extensions: 421615
Number of successful extensions: 999
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)