Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M01
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.5  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   6.2  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   6.2  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   6.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.2  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +3

Query: 162 SQW---WSFSPLRSKQRAYLRGMRAP 230
           SQW   W+F+P+R   + +  G+R P
Sbjct: 254 SQWLAHWAFAPIRWVAKLWDSGLRKP 279


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
 Frame = +2

Query: 368 GWNMSYTPMSFNGLFRT-TLVLIWNLGXXXXXXXXXXXXXXXXXCLKTSLRLTSAKFLYM 544
           GW     PM +  +F   T VL+  +G                  L T + + S   L +
Sbjct: 82  GWTS--IPMLYAYVFYVVTTVLVVLVGYERFDILLNKSKNLQFPLLSTLIIIISLGCLIL 139

Query: 545 SAIFVLGCGSMTSIEYFPSVP*GSSXTKALSFFRFXNGNCPFWYI 679
           + +F+L   ++  +E F         T  L      N NC  WYI
Sbjct: 140 AVVFLLTLSAL--LEGFTLY----HTTAYLHIITMINMNCALWYI 178


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
 Frame = +2

Query: 368 GWNMSYTPMSFNGLFRT-TLVLIWNLGXXXXXXXXXXXXXXXXXCLKTSLRLTSAKFLYM 544
           GW     PM +  +F   T VL+  +G                  L T + + S   L +
Sbjct: 82  GWTS--IPMLYAYVFYVVTTVLVVLVGYERFDILLNKSKNLQFPLLSTLIIIISLGCLIL 139

Query: 545 SAIFVLGCGSMTSIEYFPSVP*GSSXTKALSFFRFXNGNCPFWYI 679
           + +F+L   ++  +E F         T  L      N NC  WYI
Sbjct: 140 AVVFLLTLSAL--LEGFTLY----HTTAYLHIITMINMNCALWYI 178


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
 Frame = +2

Query: 368 GWNMSYTPMSFNGLFRT-TLVLIWNLGXXXXXXXXXXXXXXXXXCLKTSLRLTSAKFLYM 544
           GW     PM +  +F   T VL+  +G                  L T + + S   L +
Sbjct: 82  GWTS--IPMLYAYVFYVVTTVLVVLVGYERFDILLNKSKNLQFPLLSTLIIIISLGCLIL 139

Query: 545 SAIFVLGCGSMTSIEYFPSVP*GSSXTKALSFFRFXNGNCPFWYI 679
           + +F+L   ++  +E F         T  L      N NC  WYI
Sbjct: 140 AVVFLLTLSAL--LEGFTLY----HTTAYLHIITMINMNCALWYI 178


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 301 SFMHYGRHEYILLCD 345
           S++  GR+E ILLC+
Sbjct: 251 SYVDGGRNEIILLCE 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,949
Number of Sequences: 336
Number of extensions: 3016
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)