Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_M01
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0012 - 7346282-7347136,7347234-7347593 46 3e-05
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 1e-04
11_01_0750 - 6315126-6315896,6316371-6316784 43 2e-04
11_01_0771 + 6453130-6454488 42 5e-04
11_02_0011 - 7337618-7338496,7338596-7338991 42 7e-04
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 40 0.002
05_06_0044 - 25150322-25151260 33 0.19
01_01_1152 + 9170628-9171899 33 0.33
01_06_0824 - 32243495-32244319,32244449-32244859 32 0.58
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 31 0.77
12_01_1067 - 11009508-11010071,11010122-11010679 28 7.2
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 28 7.2
11_01_0767 + 6438648-6438809,6439146-6440000 28 9.5
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 46.4 bits (105), Expect = 3e-05
Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Frame = -2
Query: 609 YGTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKD--VDDFGLEDVDVKLPRF 436
YG + SM + LP R + + A + +D ++ D+++PRF
Sbjct: 236 YGENVGLSMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRF 295
Query: 435 QISTNVVLNKPLNDMGV---YDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXXX 265
++S +N+ L MG+ +D+ + DL+ I E + V ++H+A +E
Sbjct: 296 KVSFYSEMNEVLKGMGIGAAFDVGKVDLSGM--IDGELVVVEKVMHRAVVEVNEEGTEAA 353
Query: 264 XXXXXXXTD---RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 133
+++P F A+ PF +FV+E+ + V+F+G PT
Sbjct: 354 AATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDPT 401
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 44.4 bits (100), Expect = 1e-04
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Frame = -2
Query: 624 VXELPYGTDG---KYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVD 454
V +LPY G ++SM ++LP + + + + +N + F L+K + +
Sbjct: 299 VLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSEPEF--LEKHIPTRQVTVGQ 353
Query: 453 VKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK---ENIFVSAIVHKADIEXXX 283
KLP+F+IS + L +G++ F + + + +N+FVS++ HK+ +E
Sbjct: 354 FKLPKFKISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNE 413
Query: 282 XXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSG 151
T R SAP F A+ PF++ + E T V+F G
Sbjct: 414 EGTEAAAATAAVITLR-SAPIAEDFVADHPFLFLIQEDMTGVVLFVG 459
Score = 39.9 bits (89), Expect = 0.002
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Frame = -2
Query: 681 MMYQKGQFPXSNLKKLKAFVXELPY---GTDGKYSMLVILPHPRTKIADMYKNFADVNLK 511
M +K Q+ S+ LK V +LPY G ++SM ++LP + + + + +N +
Sbjct: 535 MSTRKKQY-LSSYDSLK--VLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEK---LNSE 588
Query: 510 DVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK-- 337
F ++ + + KLP+F+IS + L +G+ +F ++ + +
Sbjct: 589 PEF--MENHIPMRPVHVGQFKLPKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDSPG 646
Query: 336 -ENIFVSAIVHKADIE-XXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTV 163
+N+FVS++ HK+ IE R F A+ PF++ + E T +
Sbjct: 647 AQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVI 706
Query: 162 IFSGIYSKP 136
+F G P
Sbjct: 707 LFIGHVVNP 715
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 43.2 bits (97), Expect = 2e-04
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 9/173 (5%)
Frame = -2
Query: 624 VXELPYG---TDGKYSMLVILPHPRTKIADM-YKNFADVNLKDVFKQLQKDVDDFGLEDV 457
V +LPY + K+SM + LP + ++ K F++ + +K V
Sbjct: 228 VIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTEKC-------HV 280
Query: 456 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 292
+ +P F+IS + + L DMG+ F + A F + KE+ +F+S ++HKA +E
Sbjct: 281 GISVPNFKISFQIDVKDFLKDMGLELPFLRE-AEFSDMIKEDDSSGPLFLSDVLHKAVLE 339
Query: 291 XXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPT 133
+ A F A+ PF + + E+ + TVIF G P+
Sbjct: 340 VDQKGIEETSVSMGLGKP-LPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPS 391
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = -2
Query: 456 DVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN-----IFVSAIVHKADIE 292
+ ++P+F++S + L +G+ F P+LA+ + +++ +FV I HKA IE
Sbjct: 335 EFRVPKFKVSCGGSVVGALEQLGLRLPFSPELADLSDMVEDDGSGWPLFVGDIQHKAVIE 394
Query: 291 XXXXXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKPTV 130
P F A PF YF++E+ ++ V+F+G P++
Sbjct: 395 VNEEGTVAAAATMTRMLPSGVPPPPVDFVAEHPFAYFIVEEMSSAVVFAGHIVDPSM 451
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 41.5 bits (93), Expect = 7e-04
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Frame = -2
Query: 588 SMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQISTNVVLN 409
SM + LP R + + A + F L+ E D+++PRF++S +N
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSF--LRDHRPTRRREVGDLRVPRFKVSFYSQIN 320
Query: 408 KPLNDMGV---YDIFQPDLANFQRITKEN---IFVSAIVHKADIEXXXXXXXXXXXXXXX 247
L MGV +D + DL+ + + V + H+A +E
Sbjct: 321 GVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACT 380
Query: 246 XTD-RISAPA-FHANRPFVYFVMEKTTTTVIFSGIYSKPT 133
+S P F A+ PF +FV+E+T+ V+F+G PT
Sbjct: 381 IRLLSMSYPEDFVADHPFAFFVVEETSGAVLFAGHVLDPT 420
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 40.3 bits (90), Expect = 0.002
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 9/172 (5%)
Frame = -2
Query: 624 VXELPY--GTD-GKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVD 454
V +LPY G D ++SM ++LP + ++ A +N + F L+K + +
Sbjct: 91 VLKLPYQKGRDLRQFSMYILLPEAQD---GLWSLAAKLNSEPEF--LEKRIPTRQVTVGK 145
Query: 453 VKLPRFQISTNVVLNKPLNDMGVYDIF--QPDLANFQRIT-KENIFVSAIVHKADIEXXX 283
KLP+F+IS + L +G+ F + DL + N+FVS++ HK+ ++
Sbjct: 146 FKLPKFKISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDE 205
Query: 282 XXXXXXXXXXXXXTDRISAPA---FHANRPFVYFVMEKTTTTVIFSGIYSKP 136
+ R SAP F A+ PF++ + E T V+F G P
Sbjct: 206 EGTEAAAASAAVVSFR-SAPVTVDFVADHPFLFLIREDMTGVVLFIGHVVNP 256
>05_06_0044 - 25150322-25151260
Length = 312
Score = 33.5 bits (73), Expect = 0.19
Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Frame = -2
Query: 606 GTDGKYSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVKLPRFQIS 427
G D ++M + LP R + ++ + A N ++ + ++ K+P+F++S
Sbjct: 148 GGDKMFAMYIYLPDDRDGLPELARKLAS-NPAAFLRRTIVPAQPVAVGEL--KIPKFEVS 204
Query: 426 TNVVLNKPLNDMGVYDIFQPDLAN-FQRIT---KENIFVSAIVHKADI----EXXXXXXX 271
V ++ L + G+ F P N F + + VS+++H+ + E
Sbjct: 205 LKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGTVAAAG 264
Query: 270 XXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPTVY 127
F A+ PF++F++E+ + V+F+G P ++
Sbjct: 265 TVGEIMGFAMPDDQIVDFVADHPFLFFIVEEVSGLVVFAGQVVNPLLH 312
>01_01_1152 + 9170628-9171899
Length = 423
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -2
Query: 447 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKENIFVSAIVHKADIEXXXXXXXX 268
+P+F+ S + +GV F + + +F++ + H+A IE
Sbjct: 314 VPKFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVA 373
Query: 267 XXXXXXXXTDRISA--PA-FHANRPFVYFVMEKTTTTVIFSGIYSKP 136
+ S+ P F A+RPF++ V+E+ T V+F G P
Sbjct: 374 AASTAVVMMQKGSSLPPVDFVADRPFLFAVVEELTGAVLFLGHVVNP 420
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 31.9 bits (69), Expect = 0.58
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Frame = -2
Query: 447 LPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITK-----ENIFVSAIVHKADIEXXX 283
+PRF +S + L +G+ F+ A+ + + E I VSA+ H++ +E
Sbjct: 292 VPRFTLSYKTNAAETLRQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNE 351
Query: 282 XXXXXXXXXXXXXTDRISAPA-------FHANRPFVYFVMEKTTTTVIFSGIYSKPT 133
T +AP+ F A+ PF++ + E T V+F+G + P+
Sbjct: 352 EGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLTGVVVFAGQVTNPS 408
>03_05_0001 -
19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 537 CTCLRSSFSGAGV*PASSTFRRCRKEVP 620
C CL S SG G+ PA +F CR + P
Sbjct: 536 CPCLPESSSGCGILPAPPSFNPCRCDKP 563
>12_01_1067 - 11009508-11010071,11010122-11010679
Length = 373
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 641 RSLRPSXWNFLTAPTESTRCWSYSRTRERRSQTC 540
+ L PS W+ L A T +SRT E R QTC
Sbjct: 164 KGLTPSSWDHLDAVAGGT---FFSRTSEERLQTC 194
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 291 PLYQLYALWPTRIYSPL*SAGSWLSLAGICRTLPCRLMAYLGR 419
P+ +ALW T + L A SWL +A + + P + YL R
Sbjct: 69 PVADAHALWVTSVACELWLAASWL-IAQLPKLSPANRVTYLDR 110
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 219 FHANRPFVYFVMEKTTTTVIFSGIYSKPT 133
F A+ PF +F++E+ + ++F+G P+
Sbjct: 307 FVADHPFAFFIVEERSQAIVFAGHVLDPS 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,450,885
Number of Sequences: 37544
Number of extensions: 314021
Number of successful extensions: 738
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -