Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_M01
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    38   0.006
At5g39380.1 68418.m04771 calmodulin-binding protein-related has ...    30   1.9  
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi...    29   4.5  
At1g62170.1 68414.m07013 serpin family protein / serine protease...    28   5.9  
At1g72410.1 68414.m08374 COP1-interacting protein-related simila...    28   7.9  

>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 11/177 (6%)
 Frame = -2

Query: 624 VXELPYGTDGK-YSMLVILPHPRTKIADMYKNFADVNLKDVFKQLQKDVDDFGLEDVDVK 448
           V  LPY  D + ++M + LP+ R  +  + +   +++ K  F  L   +    +     K
Sbjct: 222 VLRLPYVEDQRQFAMYIYLPNDRDGLPTLLE---EISSKPRF--LDNHIPRQRILTEAFK 276

Query: 447 LPRFQISTNVVLNKPLNDMGVYDIFQ----PDLANFQRITK-----ENIFVSAIVHKADI 295
           +P+F+ S     +  L +MG+   F      ++     I +     EN+FVS + HKA I
Sbjct: 277 IPKFKFSFEFKASDVLKEMGLTLPFTHGSLTEMVESPSIPENLCVAENLFVSNVFHKACI 336

Query: 294 E-XXXXXXXXXXXXXXXXTDRISAPAFHANRPFVYFVMEKTTTTVIFSGIYSKPTVY 127
           E                  D +    F A+ PF++ V E+ +  ++F G    P+++
Sbjct: 337 EVDEEGTEAAAVSVASMTKDMLLMGDFVADHPFLFTVREEKSGVILFMGQVLDPSIH 393


>At5g39380.1 68418.m04771 calmodulin-binding protein-related has
           weak similarity to calmodulin-binding proteins
          Length = 507

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 498 QLQKDVDDFGLEDVDVKLPRFQISTNVVLNKPLNDMGVYDIFQPDLANFQRITKEN 331
           +  K +DD+ +E+  + +   + + NVV     N  G  + F P L   Q   K++
Sbjct: 289 EFNKQLDDYPVEEKTLHVVEMETTNNVVSENDQNQQGFVEPFLPPLPPTQSTPKDD 344


>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1311

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +2

Query: 182  SITK*TKGLFAWNAGAEILSVRVATVDAEATVPDSVTSISALCTMADTNIFSFVIRWKLA 361
            +I K  + L++ N   E  S+   T+   A   DS + +S LC   +  +    I+  LA
Sbjct: 946  TIVKNCRALYSLNV--EHCSLTSRTIQKVANALDSKSGLSQLCIGYNNPVSGSSIQNLLA 1003

Query: 362  KSGWNMSYTPMSFNGL 409
            K     S+  +S NG+
Sbjct: 1004 KLATLSSFAELSMNGI 1019


>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 219 FHANRPFVYFVMEKTTTTVIFSGIYSKPT 133
           F A+ PF++ + E+ T TV+F+G    P+
Sbjct: 404 FVADHPFLFLIREEQTGTVLFAGQIFDPS 432


>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
           to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
           thaliana] GI:3327870
          Length = 1163

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 700 GNRQREHDVPERTVPVXKPKEA*GLRXGTSLRHRRKVLDAGHTPAPENEDRRHVQELRRC 521
           G+ +   D  E +  V + +   G+   TS    R V+D   + A +N+  RHV  L+  
Sbjct: 383 GDEEASRDRVESSKTVTETRLVSGVE-ATSYVQSRSVIDPNVSSASQNQTERHVDRLQNV 441

Query: 520 QS 515
            S
Sbjct: 442 MS 443


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,096
Number of Sequences: 28952
Number of extensions: 256080
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)