Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L24
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 243 3e-65
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 238 6e-64
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 98 1e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 33 0.070
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 29 0.86
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.5
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 27 3.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 243 bits (594), Expect = 3e-65
Identities = 106/133 (79%), Positives = 120/133 (90%)
Frame = -1
Query: 541 PRHGKYMAXCXXYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 362
PR G+YMA C YRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 361 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 182
+AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 430
Query: 181 ALEKDYEEVGMDS 143
ALE+DYEEVG DS
Sbjct: 431 ALERDYEEVGQDS 443
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 680 PRIQFPXVTXXXSHXXREGLXMNKLFRXPRSQTHXSSPXNQMVKCDP 540
PRI FP VT + + + +Q P NQMVKCDP
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCF--EPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 238 bits (583), Expect = 6e-64
Identities = 105/133 (78%), Positives = 118/133 (88%)
Frame = -1
Query: 541 PRHGKYMAXCXXYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 362
PR G+YMA C YRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 361 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 182
++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 181 ALEKDYEEVGMDS 143
ALE+DYEEVG DS
Sbjct: 427 ALERDYEEVGQDS 439
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 680 PRIQFPXVTXXXSHXXREGLXMNKLFRXPRSQTHXSSPXNQMVKCDP 540
PRI FP VT + + + +Q P NQMVKCDP
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCF--EPYNQMVKCDP 307
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 98.3 bits (234), Expect = 1e-21
Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Frame = -1
Query: 547 ATPRHGKYMAXCXXYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 368
A PRHG+Y+ +RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK--- 359
Query: 367 GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR-- 194
DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA
Sbjct: 360 --DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 193 -EDLAALEKDYEEVGMD 146
DL + + Y+E G+D
Sbjct: 415 MNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 51.6 bits (118), Expect = 1e-07
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Frame = -1
Query: 502 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 323
+G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + ML+
Sbjct: 325 QGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLA 379
Query: 322 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 161
N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 32.7 bits (71), Expect = 0.070
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = -2
Query: 603 PSAEITNAXFEPXQPDGEMRPPVMASTWLXVXCTVVTSYPRM*TRPSLPSKPSVLSNSST 424
P+A + QP P + S VV P + RP++P P LS
Sbjct: 518 PAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQP 577
Query: 423 GVQPVSRSVSTTSHPPWCP 367
V PV+ V + PP P
Sbjct: 578 PVAPVAPEVPSVPQPPVAP 596
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 484 WVRRHHGTXYXKPCTCHDGGSHFTIWLXGL 573
W R H Y KPC DGG W G+
Sbjct: 16 WRRDHPFGFYAKPCKSSDGGLDLMNWKVGI 45
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 297 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 124
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 123 EPKSTK 106
EP+ TK
Sbjct: 208 EPRFTK 213
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 458 GSDGRVHILGYDVTTVXXTXSHVLAMTGGRISPSGWXGSXXAFVISADGKAC 613
G+D + + D+T + H L +T ++SP S +SADG C
Sbjct: 276 GADCSIRFMSLDLTKLSQVYKHSLPVTDMQLSPD----SEALVSVSADGLLC 323
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 465 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 379
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,405
Number of Sequences: 5004
Number of extensions: 49685
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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