BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L23 (849 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 225 5e-60 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 222 4e-59 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 82 8e-17 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 8e-08 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.013 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.5 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.9 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.9 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 225 bits (551), Expect = 5e-60 Identities = 100/128 (78%), Positives = 115/128 (89%), Gaps = 1/128 (0%) Frame = -1 Query: 513 WLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKV 337 ++A C RGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV Sbjct: 316 YMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKV 375 Query: 336 QRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 157 RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+D Sbjct: 376 NRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERD 435 Query: 156 YEEVGMDS 133 YEEVG DS Sbjct: 436 YEEVGQDS 443 Score = 110 bits (265), Expect = 2e-25 Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 2/98 (2%) Frame = -3 Query: 781 PTYTNLN--VSSXRFXLXXXFLXSXAXXXGPHRVPDKXVPYPRIHFPLVTYAPVXSAEKA 608 PTY NLN ++ + + + + VPYPRIHFPLVTY+P+ SA KA Sbjct: 226 PTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKA 285 Query: 607 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 494 +HE SV EITN CFEP NQMVKCDPR G+YMA C+LY Sbjct: 286 FHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLY 323 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 222 bits (543), Expect = 4e-59 Identities = 100/131 (76%), Positives = 114/131 (87%), Gaps = 1/131 (0%) Frame = -1 Query: 522 ASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 346 A ++A C RGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++ Sbjct: 309 AGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEI 368 Query: 345 AKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 166 AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAAL Sbjct: 369 AKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 428 Query: 165 EKDYEEVGMDS 133 E+DYEEVG DS Sbjct: 429 ERDYEEVGQDS 439 Score = 109 bits (263), Expect = 4e-25 Identities = 47/60 (78%), Positives = 51/60 (85%) Frame = -3 Query: 673 VPYPRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 494 VPYPRIHFPLVTYAP+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LY Sbjct: 260 VPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLY 319 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 82.2 bits (194), Expect = 8e-17 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Frame = -1 Query: 492 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 313 RG V K+V+ I +++TK + FV+W P + PP DL + + + Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIG 369 Query: 312 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVG 142 N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAG 429 Query: 141 MD 136 +D Sbjct: 430 ID 431 Score = 61.7 bits (143), Expect = 1e-10 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Frame = -3 Query: 781 PTYTNLN--VSSXRFXLXXXFLXSXAXXXGPHRVPDKXVPYPRIHFPLVTYAPVXSAEKA 608 P+Y +LN VS+ + F ++ VP+PR+HF +V +AP+ + + Sbjct: 220 PSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSS 279 Query: 607 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 494 + +SV E+T F+ N MV DPRHG+Y+ L+ Sbjct: 280 SFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALF 317 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 52.4 bits (120), Expect = 8e-08 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 4/140 (2%) Frame = -1 Query: 558 PPTRW*NATPVMASTWLAVC-CTRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 382 P + + P S ++++ +G+ P DV+ ++ I+ +R F+ W P +V ++ Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361 Query: 381 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 205 + P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416 Query: 204 --GEFSEAREDLAALEKDYE 151 EF +R+ +A L +YE Sbjct: 417 DLNEFDSSRDVVADLINEYE 436 Score = 30.7 bits (66), Expect = 0.27 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = -3 Query: 673 VPYPRIHFPLVTYAPVXS---AEKAYHEQLSVAEITNACFEPANQMVKCDP 530 +P PR HF L +Y P + E + +V ++ P NQMV +P Sbjct: 261 IPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 35.1 bits (77), Expect = 0.013 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = -2 Query: 500 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357 A PVV P + RP++P P LS V PV+ V + PP P Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 Score = 29.5 bits (63), Expect = 0.63 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 500 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357 A PVV P + RP++P P S PV V + PP P Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686 Score = 27.1 bits (57), Expect = 3.4 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = -2 Query: 497 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 351 VP V S P+ P +P PSV + V P SV P PEA Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA 691 Score = 26.6 bits (56), Expect = 4.4 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = -2 Query: 494 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 354 P V S P+ P +P PSV + V P + SV P PE Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585 Score = 26.2 bits (55), Expect = 5.9 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = -2 Query: 497 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 354 VP S P+ P +P PSV + V P + SV P PE Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 675 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 28.3 bits (60), Expect = 1.5 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -2 Query: 287 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 114 G+ TS TS T S S++ S+P P W P+ S+ TP+ V Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207 Query: 113 EPKSTK 96 EP+ TK Sbjct: 208 EPRFTK 213 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 5.9 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -2 Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 26.2 bits (55), Expect = 5.9 Identities = 26/101 (25%), Positives = 40/101 (39%) Frame = -2 Query: 494 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXX 315 PVV + P T+P S P+ S + PVS + T + PP A R N Sbjct: 988 PVVQNKPAA-TKPV--SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAA 1042 Query: 314 XXXXXXPKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP 192 + A T S++ PS ++ +S + S+P Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,044,987 Number of Sequences: 5004 Number of extensions: 64277 Number of successful extensions: 238 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 237 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 420459900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -