Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L21
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)                  31   1.4  
SB_52016| Best HMM Match : Cystatin (HMM E-Value=0.87)                 29   5.8  
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  28   7.7  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_7153| Best HMM Match : 6PF2K (HMM E-Value=1.9e-25)
          Length = 301

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -1

Query: 753 PNXQKHXKLMXLXSYHSFP*GSSKLVRFFEKQDHCLKALDRACRV-----XTAWLDQGAK 589
           P+  K+  +  +  Y     G  KL  FF+  +   +A+ R C +      ++WLD+G +
Sbjct: 62  PSDYKYKVVFNVGEYRRKAVGMDKLHDFFKVDNQEAQAIRRQCAIDCLNDVSSWLDEGVQ 121

Query: 588 SYEMK 574
           + E+K
Sbjct: 122 AAEVK 126


>SB_52016| Best HMM Match : Cystatin (HMM E-Value=0.87)
          Length = 212

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 357 KRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYG-YQPPVQTADDIAAQPPPRSQA 190
           + ++ + PL   +  L D     R H    ++    YQ  V+ + D  A PPPR ++
Sbjct: 117 RAEKLILPLKIYVNQLQDAIEVERNHTRHVSYQLSNYQQRVRRSSDREAPPPPRRRS 173


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 300 HHHRASPCACSAVTECAA 353
           H  R +PCACS  T+C A
Sbjct: 540 HRDRHAPCACSTSTKCIA 557


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 470 HRVTRPVLVPHRIHHLHHQIRV 405
           HRVTRPV+V  R + ++H + V
Sbjct: 478 HRVTRPVMVEWRANPIYHLLNV 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,312,957
Number of Sequences: 59808
Number of extensions: 304192
Number of successful extensions: 1021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)