Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L21
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z92849-6|CAB07429.2|  306|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC006833-6|AAF60950.1|  491|Caenorhabditis elegans Hypothetical ...    28   6.8  
U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical p...    28   9.0  

>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 309  GDGDSTSRTHNS---QFNHPYGYQPPVQTADDIAAQPPPR 199
            GDG STS++H+S     NH   YQPPV  +        PR
Sbjct: 1188 GDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPR 1227



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 297  STSRTHNSQFNH-PYGYQPPV--QTADDIAAQPPPRSQADIDYELKVRKFLEMT 145
            S+ +++  ++N  P G  PP   Q++ + A  PP  S+   DY   VRK  E+T
Sbjct: 1219 SSQQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPPHYSEMSNDYNRMVRKLAELT 1272


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 309  GDGDSTSRTHNS---QFNHPYGYQPPVQTADDIAAQPPPR 199
            GDG STS++H+S     NH   YQPPV  +        PR
Sbjct: 998  GDGRSTSQSHHSAGGSMNHQNFYQPPVYQSSSSQQSYQPR 1037



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 297  STSRTHNSQFNH-PYGYQPPV--QTADDIAAQPPPRSQADIDYELKVRKFLEMT 145
            S+ +++  ++N  P G  PP   Q++ + A  PP  S+   DY   VRK  E+T
Sbjct: 1029 SSQQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPPHYSEMSNDYNRMVRKLAELT 1082


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -1

Query: 369 QSNNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQA 190
           Q N+K QR L+ L  R+  L DGD      N QF      +  +Q  DD+          
Sbjct: 522 QENDKEQRELAKLQDRL--LADGDLGGVETNRQFRFKLREEVQIQMGDDVDGNDGDGEDD 579

Query: 189 DIDY-ELKVRKFLEMTKEDSDYEEKV 115
           + +  E K ++  EM K   ++ E++
Sbjct: 580 EPEEDEQKKKERAEMIKFKYEHAEEL 605


>Z92849-6|CAB07429.2|  306|Caenorhabditis elegans Hypothetical
           protein H12D21.7 protein.
          Length = 306

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 707 IPFHEEAQNSLDFLKSKTTASKPLIEPAELXLPGLTRGLSHM 582
           IPF+E A+N +D+L ++TT      EP     P      SH+
Sbjct: 179 IPFNEFAENKVDYLDARTTPQFTGEEPLNKTFPDTKATGSHV 220


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 363  NNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPP 202
            NN+R    +      A   D DS S + +S  + P    PP   +DD+   PPP
Sbjct: 1305 NNRRGNRRNTNEHIQANHEDSDSFSTSRSSSPSPPPPPPPPPPPSDDLTPVPPP 1358


>AC006833-6|AAF60950.1|  491|Caenorhabditis elegans Hypothetical
           protein ZK616.1 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
 Frame = -1

Query: 366 SNNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQ-TADDIAAQ-----PP 205
           S  K Q  L    +  A+   GD+  RT      HP+  Q   + T  D  +Q     PP
Sbjct: 308 SLRKAQVELKTAQEAPAVREKGDANDRTDKDCVTHPHDLQSTEEPTTSDSNSQVSEDIPP 367

Query: 204 PRSQADIDYELKVRKFLEMTKEDSDYEEKVR 112
           P+++      LK +    + +E    EE+V+
Sbjct: 368 PKNKESGTPPLKEKTPEPIPEEPKKVEEEVK 398


>U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical
           protein C28C12.1 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/65 (20%), Positives = 34/65 (52%)
 Frame = -1

Query: 267 NHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRNFLAETTQ 88
           N+P   + PV+   ++    P +S  + D  LK +  ++ + +D+  +E ++  +++T  
Sbjct: 70  NNPKKEEEPVKDGKEVVQDQPKKSSREKDMMLKEKTAIDFSGDDNKKKETMQ--VSKTKS 127

Query: 87  YKRNR 73
            + N+
Sbjct: 128 ARNNK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,161
Number of Sequences: 27780
Number of extensions: 218328
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)