Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L21
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 479 HHRH--RVTRPVLVPHRIHHLHHQIRVIQKVLGRRSVVLN 366
           HH+H      P + P   HH HHQ + +Q +  R+   L+
Sbjct: 335 HHQHGNHTMGPTMGPPHHHH-HHQTQSLQHLHYRQPPTLS 373


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 333 LSKRMAM----LGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADID 181
           LSKR ++    LG   STS T +S+ +      P V  +D++       +Q+D D
Sbjct: 167 LSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDEVDVIGYTSNQSDTD 221


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 155 SR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLANNS 45
           SR PK I ++  K + ++    N N      N  NN+
Sbjct: 309 SREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,687
Number of Sequences: 438
Number of extensions: 2544
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)