BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L21 (804 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 38 0.008 At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low... 34 0.096 At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low... 34 0.096 At5g59510.1 68418.m07458 expressed protein 28 8.3 At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein ... 28 8.3 At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 28 8.3 At1g29220.1 68414.m03574 transcriptional regulator family protei... 28 8.3 >At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 503 Score = 37.9 bits (84), Expect = 0.008 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = -1 Query: 366 SNNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQAD 187 S NK+ + LSP+S A+L T ++ P + P T+ A PPPRS + Sbjct: 358 SENKQNKPLSPMSAT-ALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSP 416 Query: 186 IDYELKVRKF 157 + + ++ F Sbjct: 417 MMIQQQLNNF 426 >At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low similarity to DNA polymerase eta [Homo sapiens] GI:11463971; contains Pfam profile PF00817: ImpB/MucB/SamB family Length = 672 Score = 34.3 bits (75), Expect = 0.096 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -1 Query: 252 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 76 Y A+ + A PP S ID E+ L M +ED D++E VRN++ +R+ Sbjct: 123 YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 182 Query: 75 R 73 + Sbjct: 183 K 183 >At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low similarity to DNA polymerase eta [Homo sapiens] GI:11463971; contains Pfam profile PF00817: ImpB/MucB/SamB family Length = 588 Score = 34.3 bits (75), Expect = 0.096 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -1 Query: 252 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 76 Y A+ + A PP S ID E+ L M +ED D++E VRN++ +R+ Sbjct: 39 YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 98 Query: 75 R 73 + Sbjct: 99 K 99 >At5g59510.1 68418.m07458 expressed protein Length = 144 Score = 27.9 bits (59), Expect = 8.3 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = -2 Query: 164 ASSSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLA 54 + S++ P + K ++ SL Q+ +VT +C+N+A Sbjct: 81 SGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMA 117 >At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein (ZFP3) identical to zinc finger protein, ZFP3 gi|790677|gb|AAA87299; contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 235 Score = 27.9 bits (59), Expect = 8.3 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 369 QSNNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQP 244 Q+ +KR+RTL+ +RMA S F HPYG+ P Sbjct: 80 QNAHKRERTLAKRGQRMAASA----------SAFGHPYGFSP 111 >At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 378 Score = 27.9 bits (59), Expect = 8.3 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -1 Query: 288 RTHNSQFNHPYGYQPPVQTADDIAAQPPPRS 196 R +N+ +HP+ + PP +D QPPP++ Sbjct: 10 RDNNNNHHHPH-HNPPYYYSDPPPQQPPPQN 39 >At1g29220.1 68414.m03574 transcriptional regulator family protein similar to Transcriptional regulator protein HCNGP (Swiss-Prot:Q02614) [Mus musculus] Length = 351 Score = 27.9 bits (59), Expect = 8.3 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -1 Query: 210 PPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRN 109 P PR + + + K+ KFL + K + +VRN Sbjct: 135 PRPRERCSEELQRKIDKFLSLKKMGKSFNSEVRN 168 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,947,779 Number of Sequences: 28952 Number of extensions: 204047 Number of successful extensions: 698 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 669 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 694 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1824072800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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