Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L21
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ...    38   0.008
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low...    34   0.096
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low...    34   0.096
At5g59510.1 68418.m07458 expressed protein                             28   8.3  
At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein ...    28   8.3  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    28   8.3  
At1g29220.1 68414.m03574 transcriptional regulator family protei...    28   8.3  

>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 503

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -1

Query: 366 SNNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQAD 187
           S NK+ + LSP+S   A+L        T ++    P  +  P  T+    A PPPRS + 
Sbjct: 358 SENKQNKPLSPMSAT-ALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSP 416

Query: 186 IDYELKVRKF 157
           +  + ++  F
Sbjct: 417 MMIQQQLNNF 426


>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 672

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 252 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 76
           Y      A+ + A  PP S   ID E+     L M +ED  D++E VRN++      +R+
Sbjct: 123 YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 182

Query: 75  R 73
           +
Sbjct: 183 K 183


>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
           similarity to DNA polymerase eta [Homo sapiens]
           GI:11463971; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 588

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 252 YQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SDYEEKVRNFLAETTQYKRN 76
           Y      A+ + A  PP S   ID E+     L M +ED  D++E VRN++      +R+
Sbjct: 39  YLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRD 98

Query: 75  R 73
           +
Sbjct: 99  K 99


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 164 ASSSR*PKKIQTMKKKFVTSSLKQRNTNVTARCKNLA 54
           + S++ P    +  K  ++ SL Q+  +VT +C+N+A
Sbjct: 81  SGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMA 117


>At5g25160.1 68418.m02983 zinc finger (C2H2 type) family protein
           (ZFP3) identical to zinc finger protein, ZFP3
           gi|790677|gb|AAA87299; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 235

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 369 QSNNKRQRTLSPLSKRMAMLGDGDSTSRTHNSQFNHPYGYQP 244
           Q+ +KR+RTL+   +RMA             S F HPYG+ P
Sbjct: 80  QNAHKRERTLAKRGQRMAASA----------SAFGHPYGFSP 111


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 288 RTHNSQFNHPYGYQPPVQTADDIAAQPPPRS 196
           R +N+  +HP+ + PP   +D    QPPP++
Sbjct: 10  RDNNNNHHHPH-HNPPYYYSDPPPQQPPPQN 39


>At1g29220.1 68414.m03574 transcriptional regulator family protein
           similar to Transcriptional regulator protein HCNGP
           (Swiss-Prot:Q02614) [Mus musculus]
          Length = 351

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 210 PPPRSQADIDYELKVRKFLEMTKEDSDYEEKVRN 109
           P PR +   + + K+ KFL + K    +  +VRN
Sbjct: 135 PRPRERCSEELQRKIDKFLSLKKMGKSFNSEVRN 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,779
Number of Sequences: 28952
Number of extensions: 204047
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)