BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L20 (798 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 97 3e-21 SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 69 1e-12 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 59 8e-10 SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 53 5e-08 SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 52 7e-08 SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 40 4e-04 SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 32 0.11 SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 31 0.14 SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 1.0 SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 3.1 SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 27 3.1 SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.4 SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 9.5 >SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit Cct7|Schizosaccharomyces pombe|chr 2|||Manual Length = 558 Score = 97.1 bits (231), Expect = 3e-21 Identities = 49/78 (62%), Positives = 55/78 (70%) Frame = -3 Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284 IPRQL DNAG D T +LNKLR +HA GE GVD+ S V +NF K VWEP+ VK NA Sbjct: 450 IPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAIL 509 Query: 283 AACEATAQILSVDETIKN 230 +A EA ILSVDETIKN Sbjct: 510 SATEAATLILSVDETIKN 527 Score = 49.6 bits (113), Expect = 5e-07 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = -1 Query: 699 AKXMTSILRGGAEQFLEETERSLHDAIMIVR 607 AK T ILRGGA+QF+ E ERSLHDAIMIV+ Sbjct: 372 AKTCTLILRGGADQFIAEVERSLHDAIMIVK 402 Score = 39.5 bits (88), Expect = 5e-04 Identities = 16/30 (53%), Positives = 25/30 (83%) Frame = -2 Query: 596 KNDAVVAGGGAVDMQISAHLRSHSLQLAGQ 507 KN+ VVAGGGA +M++S +LR +SL ++G+ Sbjct: 406 KNNLVVAGGGACEMELSKYLRDYSLTISGK 435 >SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit Cct3|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 68.5 bits (160), Expect = 1e-12 Identities = 34/84 (40%), Positives = 46/84 (54%) Frame = -3 Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284 IPR L N G + L +LR KHA G+H+ G+D +G VVD VWEP VKL + Sbjct: 445 IPRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIK 504 Query: 283 AACEATAQILSVDETIKNVKGGEE 212 A E+ +L VD+ + V+ E Sbjct: 505 TAIESACLLLRVDDIVSGVRKHSE 528 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual Length = 527 Score = 58.8 bits (136), Expect = 8e-10 Identities = 29/74 (39%), Positives = 45/74 (60%) Frame = -3 Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284 IP LA+NAGL+ ++ +LR +HA GE T G++V G V + + V +P LV ++A Sbjct: 449 IPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQ 508 Query: 283 AACEATAQILSVDE 242 A E T I+ +D+ Sbjct: 509 LAAETTKMIMKIDD 522 Score = 34.7 bits (76), Expect = 0.016 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = -1 Query: 783 HASVLSHTALFXEKQLELTDTTFYWLSGAKXMTSILRGGAEQFLEETERSLHDAIMIVR 607 HA ++ T+ EK ++ + + K ++ + RG LEE ERSLHDA+ ++R Sbjct: 347 HADLVEETSSSGEKIVKFSGVK----NAGKTVSILCRGANLLTLEEAERSLHDALCVIR 401 Score = 30.3 bits (65), Expect = 0.33 Identities = 12/33 (36%), Positives = 22/33 (66%) Frame = -2 Query: 596 KNDAVVAGGGAVDMQISAHLRSHSLQLAGQGAV 498 K A++AGGG+ +++ + L H+ QL G+ A+ Sbjct: 405 KQRALIAGGGSPEIEAAQRLLEHARQLEGREAI 437 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 52.8 bits (121), Expect = 5e-08 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 12/89 (13%) Frame = -3 Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHT------------HGVDVISGEVVDNFAKCV 320 IPR LA NA D T L KLR HAA ++ +G+D+++G + DN V Sbjct: 453 IPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGV 512 Query: 319 WEPALVKLNAESAACEATAQILSVDETIK 233 EP++ KL + +A EA IL +D +IK Sbjct: 513 LEPSMSKLKSLKSAVEACIAILRIDTSIK 541 Score = 36.7 bits (81), Expect = 0.004 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = -1 Query: 741 QLELTDTTFYWLSGAKXMTS---ILRGGAEQFLEETERSLHDAIMIVRRTXQ 595 Q + +D + G K +S +LRG E L+E ERS+HD++ +V+RT + Sbjct: 358 QEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLE 409 >SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit Cct2|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 52.4 bits (120), Expect = 7e-08 Identities = 28/77 (36%), Positives = 41/77 (53%) Frame = -3 Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284 +P LADNAG D + L+ +L+ H G T G+D+ GE+ D AK + E +K S Sbjct: 442 LPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVS 501 Query: 283 AACEATAQILSVDETIK 233 + E +L VD +K Sbjct: 502 SGSEGAQLLLRVDTILK 518 Score = 37.9 bits (84), Expect = 0.002 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -1 Query: 717 FYWLSGAKXMTSILRGGAEQFLEETERSLHDAIMIVRRTXQE 592 F + + T +LRG Q L+E+ER++HDA+ ++ +T E Sbjct: 358 FSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAE 399 >SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit Cct8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 546 Score = 39.9 bits (89), Expect = 4e-04 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Frame = -3 Query: 463 IPRQLADNAGLDGTGLLNKL-RQKHAAGEHTHGVDV--ISGEVVDNFAKCVWEPALVKLN 293 +PR +++NAGLD T +++KL H + GVDV + +D +++ L K + Sbjct: 448 VPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKS 507 Query: 292 AESAACEATAQILSVDETIKNVKGG 218 A A E +L+VD+ + + G Sbjct: 508 AIRLATETVLTVLNVDQVVMSKPAG 532 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 31.9 bits (69), Expect = 0.11 Identities = 11/38 (28%), Positives = 25/38 (65%) Frame = -1 Query: 705 SGAKXMTSILRGGAEQFLEETERSLHDAIMIVRRTXQE 592 + ++ +T +RG + ++E +R+LHDA+ +VR ++ Sbjct: 380 ANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRD 417 >SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransferase Skb1|Schizosaccharomyces pombe|chr 2|||Manual Length = 645 Score = 31.5 bits (68), Expect = 0.14 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = -1 Query: 351 ERW--WITLRSACGSRPSSSLTPRVPPA-RPPL 262 E W W T+RSACG P + +PPA PP+ Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206 >SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 604 Score = 28.7 bits (61), Expect = 1.0 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +2 Query: 428 VQACIVCQLTRDGLKGSGHCRYSQLLLGQPVVESETGDGQRFACLLLLRQPLQHHSXIVL 607 VQA ++ L +DG G + Y G V + TG G+ + ++ + Q L H + L Sbjct: 152 VQAAVLPLLLQDGRHGPMYS-YG----GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRL 206 Query: 608 RTIMMASCRERSV 646 R +++ RE +V Sbjct: 207 RCVVIVPTRELTV 219 >SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 27.1 bits (57), Expect = 3.1 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -1 Query: 315 SRPSSSLTPRVPPARPP 265 S PSSS TP PP PP Sbjct: 3 SAPSSSTTPASPPTSPP 19 >SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pombe|chr 2|||Manual Length = 557 Score = 27.1 bits (57), Expect = 3.1 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 299 LDEGRLPHALRKVIHHLSTDNVHTVRVLPSGVLLP*FIEESG 424 +DEG ALR VI+HL T +V T+R LL I+ G Sbjct: 309 IDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348 >SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit Bgs4|Schizosaccharomyces pombe|chr 3|||Manual Length = 1955 Score = 26.2 bits (55), Expect = 5.4 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = -1 Query: 387 LGSTRTVWTLSVERWWITLRSAC 319 L T TVW + WW+++ + C Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545 >SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60|Schizosaccharomyces pombe|chr 1|||Manual Length = 582 Score = 25.4 bits (53), Expect = 9.5 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = -3 Query: 451 LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 338 + +NAGL+G ++ KL++ + E G D+ VD Sbjct: 486 ILENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,832,472 Number of Sequences: 5004 Number of extensions: 54674 Number of successful extensions: 179 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 178 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 389395636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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