Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L20
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 97 3e-21
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 69 1e-12
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 59 8e-10
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 53 5e-08
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 52 7e-08
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 40 4e-04
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 32 0.11
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 31 0.14
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 1.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 3.1
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 27 3.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.4
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 9.5
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 97.1 bits (231), Expect = 3e-21
Identities = 49/78 (62%), Positives = 55/78 (70%)
Frame = -3
Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284
IPRQL DNAG D T +LNKLR +HA GE GVD+ S V +NF K VWEP+ VK NA
Sbjct: 450 IPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAIL 509
Query: 283 AACEATAQILSVDETIKN 230
+A EA ILSVDETIKN
Sbjct: 510 SATEAATLILSVDETIKN 527
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -1
Query: 699 AKXMTSILRGGAEQFLEETERSLHDAIMIVR 607
AK T ILRGGA+QF+ E ERSLHDAIMIV+
Sbjct: 372 AKTCTLILRGGADQFIAEVERSLHDAIMIVK 402
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = -2
Query: 596 KNDAVVAGGGAVDMQISAHLRSHSLQLAGQ 507
KN+ VVAGGGA +M++S +LR +SL ++G+
Sbjct: 406 KNNLVVAGGGACEMELSKYLRDYSLTISGK 435
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 68.5 bits (160), Expect = 1e-12
Identities = 34/84 (40%), Positives = 46/84 (54%)
Frame = -3
Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284
IPR L N G + L +LR KHA G+H+ G+D +G VVD VWEP VKL +
Sbjct: 445 IPRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIK 504
Query: 283 AACEATAQILSVDETIKNVKGGEE 212
A E+ +L VD+ + V+ E
Sbjct: 505 TAIESACLLLRVDDIVSGVRKHSE 528
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 58.8 bits (136), Expect = 8e-10
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = -3
Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284
IP LA+NAGL+ ++ +LR +HA GE T G++V G V + + V +P LV ++A
Sbjct: 449 IPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQ 508
Query: 283 AACEATAQILSVDE 242
A E T I+ +D+
Sbjct: 509 LAAETTKMIMKIDD 522
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 783 HASVLSHTALFXEKQLELTDTTFYWLSGAKXMTSILRGGAEQFLEETERSLHDAIMIVR 607
HA ++ T+ EK ++ + + K ++ + RG LEE ERSLHDA+ ++R
Sbjct: 347 HADLVEETSSSGEKIVKFSGVK----NAGKTVSILCRGANLLTLEEAERSLHDALCVIR 401
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 596 KNDAVVAGGGAVDMQISAHLRSHSLQLAGQGAV 498
K A++AGGG+ +++ + L H+ QL G+ A+
Sbjct: 405 KQRALIAGGGSPEIEAAQRLLEHARQLEGREAI 437
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 52.8 bits (121), Expect = 5e-08
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Frame = -3
Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHT------------HGVDVISGEVVDNFAKCV 320
IPR LA NA D T L KLR HAA ++ +G+D+++G + DN V
Sbjct: 453 IPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGV 512
Query: 319 WEPALVKLNAESAACEATAQILSVDETIK 233
EP++ KL + +A EA IL +D +IK
Sbjct: 513 LEPSMSKLKSLKSAVEACIAILRIDTSIK 541
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = -1
Query: 741 QLELTDTTFYWLSGAKXMTS---ILRGGAEQFLEETERSLHDAIMIVRRTXQ 595
Q + +D + G K +S +LRG E L+E ERS+HD++ +V+RT +
Sbjct: 358 QEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLE 409
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 52.4 bits (120), Expect = 7e-08
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = -3
Query: 463 IPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAES 284
+P LADNAG D + L+ +L+ H G T G+D+ GE+ D AK + E +K S
Sbjct: 442 LPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVS 501
Query: 283 AACEATAQILSVDETIK 233
+ E +L VD +K
Sbjct: 502 SGSEGAQLLLRVDTILK 518
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -1
Query: 717 FYWLSGAKXMTSILRGGAEQFLEETERSLHDAIMIVRRTXQE 592
F + + T +LRG Q L+E+ER++HDA+ ++ +T E
Sbjct: 358 FSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAE 399
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = -3
Query: 463 IPRQLADNAGLDGTGLLNKL-RQKHAAGEHTHGVDV--ISGEVVDNFAKCVWEPALVKLN 293
+PR +++NAGLD T +++KL H + GVDV + +D +++ L K +
Sbjct: 448 VPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKS 507
Query: 292 AESAACEATAQILSVDETIKNVKGG 218
A A E +L+VD+ + + G
Sbjct: 508 AIRLATETVLTVLNVDQVVMSKPAG 532
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = -1
Query: 705 SGAKXMTSILRGGAEQFLEETERSLHDAIMIVRRTXQE 592
+ ++ +T +RG + ++E +R+LHDA+ +VR ++
Sbjct: 380 ANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRD 417
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -1
Query: 351 ERW--WITLRSACGSRPSSSLTPRVPPA-RPPL 262
E W W T+RSACG P + +PPA PP+
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 428 VQACIVCQLTRDGLKGSGHCRYSQLLLGQPVVESETGDGQRFACLLLLRQPLQHHSXIVL 607
VQA ++ L +DG G + Y G V + TG G+ + ++ + Q L H + L
Sbjct: 152 VQAAVLPLLLQDGRHGPMYS-YG----GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRL 206
Query: 608 RTIMMASCRERSV 646
R +++ RE +V
Sbjct: 207 RCVVIVPTRELTV 219
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 315 SRPSSSLTPRVPPARPP 265
S PSSS TP PP PP
Sbjct: 3 SAPSSSTTPASPPTSPP 19
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 299 LDEGRLPHALRKVIHHLSTDNVHTVRVLPSGVLLP*FIEESG 424
+DEG ALR VI+HL T +V T+R LL I+ G
Sbjct: 309 IDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 387 LGSTRTVWTLSVERWWITLRSAC 319
L T TVW + WW+++ + C
Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 451 LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 338
+ +NAGL+G ++ KL++ + E G D+ VD
Sbjct: 486 ILENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,472
Number of Sequences: 5004
Number of extensions: 54674
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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