Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L20
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 636 NAPSPPRTVPHHLAGSMSXS--WHRTASKKLYLSAPA 740
           N+PSP  + P H   S S S     T+S   Y+SA A
Sbjct: 60  NSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAAA 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -1

Query: 348  RWWITLRSACGSRPSSSLTPRVPPARPPLRFYQWMRPSRMSRAVKRRRCLVAAWAALVWD 169
            ++W+T  +  G   SS +  +VP  R P R       S     V+  R         V D
Sbjct: 1286 QFWVTGSTRVGEGQSSKVAAQVPTNRVPARI-----TSFGGHVVRPWRGSATLACNAVGD 1340

Query: 168  RTRQW 154
             TR+W
Sbjct: 1341 PTREW 1345



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 347  LSTDNVHTVRVLPSGVLL 400
            + TD+   +++LPSG L+
Sbjct: 1353 IRTDSTRNIQILPSGELM 1370


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -1

Query: 348  RWWITLRSACGSRPSSSLTPRVPPARPPLRFYQWMRPSRMSRAVKRRRCLVAAWAALVWD 169
            ++W+T  +  G   SS +  +VP  R P R       S     V+  R         V D
Sbjct: 1282 QFWVTGSTRVGEGQSSKVAAQVPTNRVPARI-----TSFGGHVVRPWRGSATLACNAVGD 1336

Query: 168  RTRQW 154
             TR+W
Sbjct: 1337 PTREW 1341



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 347  LSTDNVHTVRVLPSGVLL 400
            + TD+   +++LPSG L+
Sbjct: 1349 IRTDSTRNIQILPSGELM 1366


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 466 PQRLGPLPLQPTAPWPASCRE*DRRWAEICMSTAPP-PAT 582
           P+R+  +P  P  P P SC      + E    T P  P+T
Sbjct: 642 PKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPST 681


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 586 ASFLXRSPDYHDGIVQGT 639
           ASF  RS D  DGIV  T
Sbjct: 277 ASFSHRSIDVKDGIVLAT 294


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 586 ASFLXRSPDYHDGIVQGT 639
           ASF  RS D  DGIV  T
Sbjct: 277 ASFSHRSIDVKDGIVLAT 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,033
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)