Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L19
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 232 5e-62
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 88 2e-18
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 64 2e-11
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 36 0.005
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 32 0.11
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.76
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.7
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.3
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 3.0
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 27 4.0
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.3
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 232 bits (567), Expect = 5e-62
Identities = 105/169 (62%), Positives = 126/169 (74%)
Frame = -2
Query: 683 PEL*KTTEPFKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLC 504
P+ K + PF R++Y +AI+YL +NI +G ++FG+DI E ERKMTD I PI L
Sbjct: 399 PDFVKPSRPFMRLSYEDAIKYLNEHNILTPEGEQHKFGDDIAEAAERKMTDQINRPIFLT 458
Query: 503 KFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSP 324
FP EIKSFYM R VD LTESVD LMP VGEIVGGSMRI D +EL+ YK EGIDP+P
Sbjct: 459 YFPLEIKSFYMKRVVDRPELTESVDCLMPNVGEIVGGSMRISDIQELLAAYKREGIDPAP 518
Query: 323 YYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCT 177
YYW+T+QRK+G+ HGG GLGLERFL WL DRY +R+ CL+PRF ERCT
Sbjct: 519 YYWFTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFPRFTERCT 567
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 87.8 bits (208), Expect = 2e-18
Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Frame = -2
Query: 662 EPFKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIG-VPILLCKFPAEI 486
+P+K MTY EAIE L A T + ++G D+ E+ + + + P+ + +P +I
Sbjct: 288 KPWKCMTYSEAIEELSAVKKTWKYPP--KWGNDLSSEHEKYLCEILHKTPVFVTDYPQKI 345
Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306
K FYM D +VD+L+P VGE+ GGS+R DH + + Y P WY D
Sbjct: 346 KPFYMKSSGPDT--VAAVDLLVPQVGELAGGSLRK-DHLDEYKTY------PPELQWYLD 396
Query: 305 QRKFGSVPHGGYGLGLERFLCWLL-DRYHIRDVCLYPR 195
K+ + PHGG+GLG+ER + +L + ++++ +PR
Sbjct: 397 LMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFPR 434
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 64.1 bits (149), Expect = 2e-11
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = -2
Query: 503 KFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSP 324
K+P+ ++ FY +D R + S D M G EI+ G+ RI D E L+E K G+ P
Sbjct: 471 KYPSSVRPFYTMPDPEDPRYSNSYDFFMKGQ-EIMSGAQRIHDPELLVERMKALGVSPDV 529
Query: 323 -YYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195
Y D G PH G G+GLER + + L+ +IR +PR
Sbjct: 530 GLQQYIDAFAIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPR 573
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -2
Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198
++G P GG+G+G++R + +L D IR+V L+P
Sbjct: 542 EYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFP 575
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = -2
Query: 431 DVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKF------GSVPHGGY 270
D+++ G+ E+ GGS+RI H ++ + + + P Y G PHGG
Sbjct: 495 DIVVNGI-ELGGGSIRI--HNPDIQRFVLKDVLKLPENRYATFEHLIRVLSSGCPPHGGI 551
Query: 269 GLGLERFLCWLLDRYHIRDVCLYPR 195
LG +R L + IR+V +P+
Sbjct: 552 ALGFDRLAALLTNAPGIREVIAFPK 576
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 500 TCTAVSARQWRPSSSALAFPGCPLQTRRRI 589
TC + R W S FP CP + RR+
Sbjct: 1152 TCKMIEKRLWPTMSPLRQFPNCPSEVIRRV 1181
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 213 VPDVVPVQEPAEEALQTQPVAAVRHRAELALV----RIPVVRARVDAFVLVTFHQLLVVP 380
+ +++ + PA E L ++ ++ HR +A V + ++ AF+ V + L
Sbjct: 147 IDNIIDLPPPALEILSSEKDFSIFHRLSVAWVGEYSSVTMLVPDSSAFLNVYTNTELAYL 206
Query: 381 YPHGAADDLPDARHQHV 431
Y AA+D+ HQH+
Sbjct: 207 YSMYAAEDVKTLIHQHI 223
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 296 FGSVPHGGYGLGLERFLCWLLD 231
FG+ P Y + F+CWL D
Sbjct: 201 FGTSPFNAYQQNTDNFVCWLFD 222
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = -2
Query: 296 FGSVPH---GGYGLGLERFLCWLLDR 228
FG + H G Y + L+ F+ WLLDR
Sbjct: 396 FGGLHHCILGRYSISLDDFVLWLLDR 421
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 192 EARVETHVPDVVPVQEPAEEALQTQPVAAVRHRAELA 302
+ R + +PD+V V +P EE T+P + E A
Sbjct: 196 KTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVEAA 232
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 440 ESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD--QRKFGSV 285
++V + G+ EI+ + D E+L + Y EG+ P WY D +R F ++
Sbjct: 989 KTVAAKLSGMKEILFPKSNLADWEQLPD-YVKEGLTGVPVAWYDDVFKRVFSNI 1041
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 597 LRNVVGAEILYRFYIRHTFERFCGFLKF 680
L + V E +Y Y TFER+C F F
Sbjct: 3445 LNSSVFPESIYYDYFYKTFERYCDFWFF 3472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,603
Number of Sequences: 5004
Number of extensions: 54608
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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