Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L19
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09)          167   1e-41
SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   3e-41
SB_50967| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   3e-18
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)           71   1e-12
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)                    31   0.80 
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)                     28   7.5  
SB_55565| Best HMM Match : EIIBC-GUT_C (HMM E-Value=5.5)               28   7.5  
SB_37646| Best HMM Match : Cob_adeno_trans (HMM E-Value=6.9)           28   7.5  
SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)           28   7.5  
SB_25854| Best HMM Match : Vicilin_N (HMM E-Value=5.5)                 28   7.5  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)             28   9.9  
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)                    28   9.9  
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_30227| Best HMM Match : Lactamase_B (HMM E-Value=1.1e-17)           28   9.9  
SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)           28   9.9  

>SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09)
          Length = 187

 Score =  167 bits (405), Expect = 1e-41
 Identities = 69/95 (72%), Positives = 84/95 (88%), Gaps = 3/95 (3%)
 Frame = -2

Query: 455 DRRLTES---VDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKFGSV 285
           +R++T+    VD+LMPGVGEI+GGSMR+W ++EL+EGYK EGIDP+PY+WYTDQRK+GS 
Sbjct: 91  ERKMTDQINEVDLLMPGVGEIIGGSMRMWKYDELIEGYKREGIDPAPYFWYTDQRKYGSC 150

Query: 284 PHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERC 180
           PHGGYGLGLERFL WLL+R HIRDVC YPRF+ RC
Sbjct: 151 PHGGYGLGLERFLTWLLNRQHIRDVCFYPRFVGRC 185



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 715 SPERQLVYELNPNFKKPQ 662
           SP   L+YE+NP+FK P+
Sbjct: 35  SPHAHLLYEINPDFKPPK 52


>SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score =  165 bits (402), Expect = 3e-41
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = -2

Query: 434 VDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKFGSVPHGGYGLGLE 255
           VD+LMPGVGEI+GGSMR+W ++EL+EGYK EGIDP+PY+WYTDQRK+GS PHGGYGLGLE
Sbjct: 1   VDLLMPGVGEIIGGSMRMWKYDELIEGYKREGIDPAPYFWYTDQRKYGSCPHGGYGLGLE 60

Query: 254 RFLCWLLDRYHIRDVCLYPRFLERC 180
           RFL WLL+R HIRDVC YPRF+ RC
Sbjct: 61  RFLTWLLNRQHIRDVCFYPRFVGRC 85


>SB_50967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 36/54 (66%), Positives = 48/54 (88%), Gaps = 3/54 (5%)
 Frame = -2

Query: 455 DRRLTES---VDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQ 303
           +R++T+    VD+LMPGVGEI+GGSMR+W ++EL+EGYK EGIDP+PY+WYTDQ
Sbjct: 36  ERKMTDQINEVDLLMPGVGEIIGGSMRMWKYDELIEGYKREGIDPAPYFWYTDQ 89


>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
          Length = 479

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
 Frame = -2

Query: 629 IEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVP-----ILLCKFPAEIKSFYMSR 465
           +EY    ++ +E G    + ED+    E+ +   +         +L K+P  I+ FY   
Sbjct: 324 LEYREGVDMLREAGIEMGYEEDLSTPNEKFLGKLVKQKYDTDFFILDKYPLCIRPFYTMP 383

Query: 464 CVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKFGSV 285
              +  ++ S D+ + G  E++ G+ RI D E+L E   H GID      Y D  ++G+ 
Sbjct: 384 DPFNPNVSNSYDMFIRGE-EVLSGAQRIHDPEKLKERASHHGIDLETIKSYIDSFRYGAP 442

Query: 284 PHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCT 177
           PH G G+GL R +   LD +++R   ++PR  +R T
Sbjct: 443 PHAGGGIGLARVVMLYLDLHNVRKSSMFPRDPKRIT 478


>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
          Length = 360

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 267 PVAAVRHRAELALVRIPVVRARVDAFVLVTFHQLLVVPYPHGAADD 404
           P+A+V H   + LV +PV    V+   L+   + LV+ Y  GA  D
Sbjct: 6   PMASVVHTRVVVLVTLPVTSFPVNVSALLVGPEELVIKYARGAVSD 51


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 407 EIVGGSMRIWDHEELMEGYKHEGIDPSPYY 318
           E    S+ ++ H E++EGY+  GI PSP +
Sbjct: 243 EFQNSSLAVFTHSEILEGYQAIGI-PSPVF 271


>SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)
          Length = 429

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 188 LGSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRT 298
           LG   R     CG GPG  R  +P+     ++  S+T
Sbjct: 274 LGVSDRGQGVSCGRGPGVQRQGSPHDVDDAKDMSSKT 310


>SB_55565| Best HMM Match : EIIBC-GUT_C (HMM E-Value=5.5)
          Length = 166

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 179 CTALGSEGRDTR-PGCGTGPGASRGSAPNPARSRREA 286
           C   G E +D +  G G GP  +RG  P  A  + EA
Sbjct: 47  CALFGLEAKDDQLAGVGAGPRTARGGPPRVALPKIEA 83


>SB_37646| Best HMM Match : Cob_adeno_trans (HMM E-Value=6.9)
          Length = 497

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 389 MRIWDHE--ELMEGYKHEGIDPSPYY 318
           +R+W  E   L+ G + EG+DP  YY
Sbjct: 147 VRVWTEEVDPLLPGRRQEGLDPKEYY 172


>SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)
          Length = 822

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 389 MRIWDHE--ELMEGYKHEGIDPSPYY 318
           +R+W  E   L+ G + EG+DP  YY
Sbjct: 147 VRVWTEEVDPLLPGRRQEGLDPKEYY 172


>SB_25854| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
          Length = 128

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 714 RPKDSSYTNSTRTLKNHRTFQTYDVYRSDR 625
           +P+D + TN TRT  +H T Q  +  RS +
Sbjct: 50  KPQDRTNTNKTRTQHDHNTKQNSNTARSQQ 79


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 422 MPGVGEIVGGSMRIWDHEELMEGYKHEGID 333
           MPG+ E+V G+M+ W+ +  +   + EG D
Sbjct: 225 MPGLLEVVRGAMKEWESKTCVRFVEREGED 254


>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 407 EIVGGSMRIWDHEELMEGYKHEGIDPSPYY 318
           E    S+ ++ H E+ EGY+  GI PSP +
Sbjct: 688 EFQNSSLAVFTHSEIFEGYQAIGI-PSPVF 716


>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
          Length = 922

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 689 TQPEL*KTTEPFKRMTY--IEAIEYLRANNITK 597
           T+PE+ K TEP K+     + A + ++ANN+TK
Sbjct: 456 TKPEVGKPTEPLKKTEKPPVAAKKPVKANNVTK 488


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 564 HPGNARAEDDGRHWRADTAVQVPGRDQVVLHV 469
           HPG+ R E+DG  W    A+     D++V HV
Sbjct: 672 HPGSGRREEDGT-WPVMEAMSQDAIDEMVEHV 702


>SB_30227| Best HMM Match : Lactamase_B (HMM E-Value=1.1e-17)
          Length = 313

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 518 PILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGG 393
           PI+ C  P      Y+  C   ++L   VD++ PG G+I  G
Sbjct: 188 PIIDCA-PTSYIPDYIKACEQLKQLAPYVDIVFPGHGDIFDG 228


>SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)
          Length = 251

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 398 GGSMRIWDHEELMEGYKHEG 339
           GG MR+ D E+++E YK++G
Sbjct: 92  GGQMRVKDIEKVLEAYKNKG 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,942,645
Number of Sequences: 59808
Number of extensions: 432541
Number of successful extensions: 1312
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)