BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L19 (786 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas... 114 7e-26 At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmi... 108 4e-24 At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas... 102 2e-22 At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as... 74 1e-13 At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 70 2e-12 At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as... 66 3e-11 At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as... 66 3e-11 At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f... 43 2e-04 At3g17310.2 68416.m02213 methyltransferase family protein simila... 35 0.070 At3g17310.1 68416.m02212 methyltransferase family protein simila... 35 0.070 At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 35 0.070 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 31 0.87 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.87 At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putat... 31 0.87 At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 31 0.87 At1g17210.1 68414.m02097 expressed protein distantly related to ... 29 4.6 At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t... 28 6.1 At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi... 28 6.1 >At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic / asparagine-tRNA ligase 1 (SYNC1) identical to SP|Q9SW96 Length = 572 Score = 114 bits (274), Expect = 7e-26 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Frame = -2 Query: 659 PFKRMTYIEAIEYLR-ANNITKEDGSFYEFGEDIPEMPERKMTDAI-GVPILLCKFPAEI 486 PF R+TY +AIE L A KE + E+G D+ ER +T+ + P+++ +P I Sbjct: 410 PFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGI 469 Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306 K+FYM R DD + ++DVL+P VGE++GGS R ++ + + + G+ PY WY D Sbjct: 470 KAFYM-RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLD 528 Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 192 R++G+V H G+GLG ER + + +IRDV +PR+ Sbjct: 529 LRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRY 566 >At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmic, putative / asparagine-tRNA ligase, putative similar to SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis thaliana] Length = 571 Score = 108 bits (260), Expect = 4e-24 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%) Frame = -2 Query: 656 FKRMTYIEAIEYLR---ANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPA 492 FKR+TY EAIE L A D E+G D+ ER +T+ PI++ +P Sbjct: 408 FKRVTYTEAIERLEKAVAQGKVVFDNKV-EWGIDLASEHERYLTEVEFDQKPIIVYNYPK 466 Query: 491 EIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWY 312 IK+FYM R DD + ++DVL+P VGE++GGS R ++ + + + G+ PY WY Sbjct: 467 GIKAFYM-RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWY 525 Query: 311 TDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 192 D R++G+V H G+GLG ER + + +IRDV +PR+ Sbjct: 526 LDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRY 565 >At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast, mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO) nearly identical to SP|O48593 Length = 567 Score = 102 bits (245), Expect = 2e-22 Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 3/157 (1%) Frame = -2 Query: 656 FKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPAEIK 483 F ++ Y +AIE L N K+ ++G D+ ER +T+ G P+++ +P EIK Sbjct: 408 FLQLGYTDAIEILLKAN--KKFDFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIK 465 Query: 482 SFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHE-GIDPSPYYWYTD 306 +FYM R DD + ++D+L+P +GE++GGS R + E++E E ++ Y+WY D Sbjct: 466 AFYM-RENDDGKTVAAMDMLVPRIGELIGGSQRE-ERLEVLEARLDELKLNKESYWWYLD 523 Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195 R++GSVPH G+GLG ER + ++ +IRDV +PR Sbjct: 524 LRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560 >At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative simialr to aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus norvegicus SP|P15178; contains Pfam profile PF00152 tRNA synthetases class II (D, K and N) Length = 532 Score = 73.7 bits (173), Expect = 1e-13 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Frame = -2 Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-----LLCKFPAEI 486 R+T+ E I+ L KE G + D+ ERK+ + +L ++P+ + Sbjct: 376 RLTFAEGIQML------KEAGEEVDPLGDLNTESERKLGQLVLEKYKTEFYMLHRYPSAV 429 Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306 + FY +D + S DV + G EI+ G+ RI D E L + + GID Y D Sbjct: 430 RPFYTMPYENDSNYSNSFDVFIRGE-EIMSGAQRIHDPELLEKRARECGIDVKTISTYID 488 Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCT 177 ++G+ PHGG+G+GLER + L +IR L+PR +R T Sbjct: 489 AFRYGAPPHGGFGVGLERVVMLLCALNNIRKTSLFPRDSQRLT 531 >At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic / asparagine-tRNA ligase 2 (SYNC2) nearly identical to SP|Q9SW95; HMM hit: tRNA synthetases class II Length = 638 Score = 70.1 bits (164), Expect = 2e-12 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 1/153 (0%) Frame = -2 Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGV-PILLCKFPAEIKSFY 474 R +Y E I L+ TK + E+G + +TD I P+++ +P IK FY Sbjct: 481 RFSYTEVISLLQKATTTKFETK-PEWGVALTTEHLSYLTDEIYKGPVIVHTYPKAIKQFY 539 Query: 473 MSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKF 294 + R DD++ + D+++P VG ++ GS E L G + WY D R+ Sbjct: 540 V-RLNDDKKTVAAFDLVVPKVGVVITGSQNEERFEILDARIGESGFTREKFEWYLDLRRH 598 Query: 293 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195 G+V H G L +E+ L + I+D +PR Sbjct: 599 GTVKHSGISLSMEQMLLYATGLPDIKDAIPFPR 631 >At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative similar to Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) [Homo sapiens] GI:20178330 Length = 558 Score = 65.7 bits (153), Expect = 3e-11 Identities = 36/110 (32%), Positives = 57/110 (51%) Frame = -2 Query: 512 LLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGID 333 +L ++P ++ FY C D+ + S DV + G EI+ G+ R+ E L + GID Sbjct: 447 ILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE-EIISGAQRVHIPEVLEQRAGECGID 505 Query: 332 PSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLER 183 Y D ++G+ HGG+G+GLER + +IR L+PR +R Sbjct: 506 VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQR 555 >At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative similar to Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) [Homo sapiens] GI:20178330 Length = 558 Score = 65.7 bits (153), Expect = 3e-11 Identities = 36/110 (32%), Positives = 57/110 (51%) Frame = -2 Query: 512 LLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGID 333 +L ++P ++ FY C D+ + S DV + G EI+ G+ R+ E L + GID Sbjct: 447 ILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE-EIISGAQRVHIPEVLEQRAGECGID 505 Query: 332 PSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLER 183 Y D ++G+ HGG+G+GLER + +IR L+PR +R Sbjct: 506 VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQR 555 >At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) family protein similar to SP|P36419 Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS) {Thermus thermophilus}; contains Pfam profile PF00152: tRNA synthetases class II (D, K and N) Length = 664 Score = 43.2 bits (97), Expect = 2e-04 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Frame = -2 Query: 431 DVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDP----SPYYWYTDQRKFGSVPHGGYGL 264 D++ GV EI GGS+RI+ + + + GI P S + + + G+ PHGG Sbjct: 555 DMVYNGV-EIGGGSLRIYKRDVQEKVLEIIGISPEEAESKFGYLLEALDMGAPPHGGIAY 613 Query: 263 GLERFLCWLLDRYHIRDVCLYPR 195 GL+R + L IRDV +P+ Sbjct: 614 GLDRMVMMLGGASSIRDVIAFPK 636 >At3g17310.2 68416.m02213 methyltransferase family protein similar to cytosine methyltransferase (GI:7658293) [Arabidopsis thaliana] Length = 710 Score = 34.7 bits (76), Expect = 0.070 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -2 Query: 629 IEYLRANNITKEDG-SFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDD 453 +E L + T+ G SF+ E PE TD I + +L KFP + F + R D Sbjct: 86 LEILTKSTETEPPGPSFHGLMEPKPEPDIEYETDRIRIALLTMKFPENLVDFALDRLGKD 145 Query: 452 RRLTESVDVLM 420 + E VD ++ Sbjct: 146 TPIDEMVDFIV 156 >At3g17310.1 68416.m02212 methyltransferase family protein similar to cytosine methyltransferase (GI:7658293) [Arabidopsis thaliana] Length = 710 Score = 34.7 bits (76), Expect = 0.070 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -2 Query: 629 IEYLRANNITKEDG-SFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDD 453 +E L + T+ G SF+ E PE TD I + +L KFP + F + R D Sbjct: 86 LEILTKSTETEPPGPSFHGLMEPKPEPDIEYETDRIRIALLTMKFPENLVDFALDRLGKD 145 Query: 452 RRLTESVDVLM 420 + E VD ++ Sbjct: 146 TPIDEMVDFIV 156 >At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative similar to SP|Q43776 Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Lycopersicon esculentum}; contains Pfam profile PF00152: tRNA synthetases class II (D, K and N) Length = 626 Score = 34.7 bits (76), Expect = 0.070 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = -2 Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198 ++G P GG+GLG++R L D +I++V +P Sbjct: 572 EYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFP 605 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 31.1 bits (67), Expect = 0.87 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +2 Query: 194 SEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGPYTSS 322 ++ R +R G G G GS P P R T + PY S+ Sbjct: 14 AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSA 56 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 31.1 bits (67), Expect = 0.87 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +2 Query: 194 SEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGPYTSS 322 ++ R +R G G G GS P P R T + PY S+ Sbjct: 14 AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSA 56 Score = 29.9 bits (64), Expect = 2.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 191 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGP 310 G G G G+GPG +R + PN +S R AP ++ P Sbjct: 21 GGAGPARGTGSGSGPGPTRRNNPN-RKSTRSAPYQSAKAP 59 >At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putative similar to ATP-binding-cassette transporter (ABC1) described in PMID:11156608 Length = 470 Score = 31.1 bits (67), Expect = 0.87 Identities = 22/67 (32%), Positives = 25/67 (37%) Frame = -2 Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYM 471 RM IE I E+GSF E+ E + K V L C AEIK Sbjct: 273 RMNSIENTGQFERTLIVAEEGSFVEYSEGCTAISHDKNQLHAAVVELYCAEGAEIKYSTR 332 Query: 470 SRCVDDR 450 C DR Sbjct: 333 GLCAGDR 339 >At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) family protein similar to SP|Q9RHV9 Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus stearothermophilus}; contains Pfam profile: PF00152 tRNA synthetases class II (D, K and N) Length = 602 Score = 31.1 bits (67), Expect = 0.87 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198 ++G P G GLG++R + L + IRDV +P Sbjct: 563 EYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 596 >At1g17210.1 68414.m02097 expressed protein distantly related to dentin phosphoryn [Homo sapiens] (GI:4322670) Length = 958 Score = 28.7 bits (61), Expect = 4.6 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +2 Query: 203 RDTRPGCGTGP--GASRGSAPNPARSRREAPSRTCAGPY 313 + R GC +GP SR P P+R + A SR +G Y Sbjct: 287 QSARNGCPSGPARNQSRLQDPGPSRKQFSASSRKASGNY 325 >At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344 Length = 902 Score = 28.3 bits (60), Expect = 6.1 Identities = 21/84 (25%), Positives = 34/84 (40%) Frame = -2 Query: 581 YEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEI 402 Y F PEM + T+ IG P P SF +C + ++ ++ G + Sbjct: 283 YVFAGPSPEMVMNQYTELIGRPA-----PMPYWSFGFHQCRYGYKNVSDLEYVVDGYAKA 337 Query: 401 VGGSMRIWDHEELMEGYKHEGIDP 330 +W + M+GYK +DP Sbjct: 338 GIPLEVMWTDIDYMDGYKDFTLDP 361 >At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 802 Score = 28.3 bits (60), Expect = 6.1 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 407 EIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYT 309 + +G RI + ELM+ H+GIDP+P + T Sbjct: 633 DTLGKKGRIAEATELMKKMLHKGIDPTPVTYRT 665 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,441,348 Number of Sequences: 28952 Number of extensions: 294174 Number of successful extensions: 921 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 910 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1765546400 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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