SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L19
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas...   114   7e-26
At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmi...   108   4e-24
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas...   102   2e-22
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    74   1e-13
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas...    70   2e-12
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    66   3e-11
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    66   3e-11
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f...    43   2e-04
At3g17310.2 68416.m02213 methyltransferase family protein simila...    35   0.070
At3g17310.1 68416.m02212 methyltransferase family protein simila...    35   0.070
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin...    35   0.070
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ...    31   0.87 
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ...    31   0.87 
At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putat...    31   0.87 
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    31   0.87 
At1g17210.1 68414.m02097 expressed protein distantly related to ...    29   4.6  
At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t...    28   6.1  
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi...    28   6.1  

>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
           / asparagine-tRNA ligase 1 (SYNC1) identical to
           SP|Q9SW96
          Length = 572

 Score =  114 bits (274), Expect = 7e-26
 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
 Frame = -2

Query: 659 PFKRMTYIEAIEYLR-ANNITKEDGSFYEFGEDIPEMPERKMTDAI-GVPILLCKFPAEI 486
           PF R+TY +AIE L  A    KE  +  E+G D+    ER +T+ +   P+++  +P  I
Sbjct: 410 PFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGI 469

Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306
           K+FYM R  DD +   ++DVL+P VGE++GGS R   ++ + +  +  G+   PY WY D
Sbjct: 470 KAFYM-RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLD 528

Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 192
            R++G+V H G+GLG ER + +     +IRDV  +PR+
Sbjct: 529 LRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRY 566


>At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmic,
           putative / asparagine-tRNA ligase, putative similar to
           SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis
           thaliana]
          Length = 571

 Score =  108 bits (260), Expect = 4e-24
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
 Frame = -2

Query: 656 FKRMTYIEAIEYLR---ANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPA 492
           FKR+TY EAIE L    A      D    E+G D+    ER +T+      PI++  +P 
Sbjct: 408 FKRVTYTEAIERLEKAVAQGKVVFDNKV-EWGIDLASEHERYLTEVEFDQKPIIVYNYPK 466

Query: 491 EIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWY 312
            IK+FYM R  DD +   ++DVL+P VGE++GGS R   ++ + +  +  G+   PY WY
Sbjct: 467 GIKAFYM-RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWY 525

Query: 311 TDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 192
            D R++G+V H G+GLG ER + +     +IRDV  +PR+
Sbjct: 526 LDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRY 565


>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
           mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
           nearly identical to SP|O48593
          Length = 567

 Score =  102 bits (245), Expect = 2e-22
 Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 3/157 (1%)
 Frame = -2

Query: 656 FKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPAEIK 483
           F ++ Y +AIE L   N  K+     ++G D+    ER +T+    G P+++  +P EIK
Sbjct: 408 FLQLGYTDAIEILLKAN--KKFDFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIK 465

Query: 482 SFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHE-GIDPSPYYWYTD 306
           +FYM R  DD +   ++D+L+P +GE++GGS R  +  E++E    E  ++   Y+WY D
Sbjct: 466 AFYM-RENDDGKTVAAMDMLVPRIGELIGGSQRE-ERLEVLEARLDELKLNKESYWWYLD 523

Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195
            R++GSVPH G+GLG ER + ++    +IRDV  +PR
Sbjct: 524 LRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560


>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
 Frame = -2

Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-----LLCKFPAEI 486
           R+T+ E I+ L      KE G   +   D+    ERK+   +         +L ++P+ +
Sbjct: 376 RLTFAEGIQML------KEAGEEVDPLGDLNTESERKLGQLVLEKYKTEFYMLHRYPSAV 429

Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306
           + FY     +D   + S DV + G  EI+ G+ RI D E L +  +  GID      Y D
Sbjct: 430 RPFYTMPYENDSNYSNSFDVFIRGE-EIMSGAQRIHDPELLEKRARECGIDVKTISTYID 488

Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCT 177
             ++G+ PHGG+G+GLER +  L    +IR   L+PR  +R T
Sbjct: 489 AFRYGAPPHGGFGVGLERVVMLLCALNNIRKTSLFPRDSQRLT 531


>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
           / asparagine-tRNA ligase 2 (SYNC2) nearly identical to
           SP|Q9SW95; HMM hit: tRNA synthetases class II
          Length = 638

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
 Frame = -2

Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGV-PILLCKFPAEIKSFY 474
           R +Y E I  L+    TK +    E+G  +       +TD I   P+++  +P  IK FY
Sbjct: 481 RFSYTEVISLLQKATTTKFETK-PEWGVALTTEHLSYLTDEIYKGPVIVHTYPKAIKQFY 539

Query: 473 MSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKF 294
           + R  DD++   + D+++P VG ++ GS      E L       G     + WY D R+ 
Sbjct: 540 V-RLNDDKKTVAAFDLVVPKVGVVITGSQNEERFEILDARIGESGFTREKFEWYLDLRRH 598

Query: 293 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195
           G+V H G  L +E+ L +      I+D   +PR
Sbjct: 599 GTVKHSGISLSMEQMLLYATGLPDIKDAIPFPR 631


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/110 (32%), Positives = 57/110 (51%)
 Frame = -2

Query: 512 LLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGID 333
           +L ++P  ++ FY   C D+   + S DV + G  EI+ G+ R+   E L +     GID
Sbjct: 447 ILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE-EIISGAQRVHIPEVLEQRAGECGID 505

Query: 332 PSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLER 183
                 Y D  ++G+  HGG+G+GLER +       +IR   L+PR  +R
Sbjct: 506 VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQR 555


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/110 (32%), Positives = 57/110 (51%)
 Frame = -2

Query: 512 LLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGID 333
           +L ++P  ++ FY   C D+   + S DV + G  EI+ G+ R+   E L +     GID
Sbjct: 447 ILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE-EIISGAQRVHIPEVLEQRAGECGID 505

Query: 332 PSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLER 183
                 Y D  ++G+  HGG+G+GLER +       +IR   L+PR  +R
Sbjct: 506 VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQR 555


>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
           family protein similar to SP|P36419 Aspartyl-tRNA
           synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
           (AspRS) {Thermus thermophilus}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 664

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = -2

Query: 431 DVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDP----SPYYWYTDQRKFGSVPHGGYGL 264
           D++  GV EI GGS+RI+  +   +  +  GI P    S + +  +    G+ PHGG   
Sbjct: 555 DMVYNGV-EIGGGSLRIYKRDVQEKVLEIIGISPEEAESKFGYLLEALDMGAPPHGGIAY 613

Query: 263 GLERFLCWLLDRYHIRDVCLYPR 195
           GL+R +  L     IRDV  +P+
Sbjct: 614 GLDRMVMMLGGASSIRDVIAFPK 636


>At3g17310.2 68416.m02213 methyltransferase family protein similar
           to cytosine methyltransferase (GI:7658293) [Arabidopsis
           thaliana]
          Length = 710

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 629 IEYLRANNITKEDG-SFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDD 453
           +E L  +  T+  G SF+   E  PE      TD I + +L  KFP  +  F + R   D
Sbjct: 86  LEILTKSTETEPPGPSFHGLMEPKPEPDIEYETDRIRIALLTMKFPENLVDFALDRLGKD 145

Query: 452 RRLTESVDVLM 420
             + E VD ++
Sbjct: 146 TPIDEMVDFIV 156


>At3g17310.1 68416.m02212 methyltransferase family protein similar
           to cytosine methyltransferase (GI:7658293) [Arabidopsis
           thaliana]
          Length = 710

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 629 IEYLRANNITKEDG-SFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDD 453
           +E L  +  T+  G SF+   E  PE      TD I + +L  KFP  +  F + R   D
Sbjct: 86  LEILTKSTETEPPGPSFHGLMEPKPEPDIEYETDRIRIALLTMKFPENLVDFALDRLGKD 145

Query: 452 RRLTESVDVLM 420
             + E VD ++
Sbjct: 146 TPIDEMVDFIV 156


>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
           lysine--tRNA ligase, putative similar to SP|Q43776
           Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 626

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198
           ++G  P GG+GLG++R    L D  +I++V  +P
Sbjct: 572 EYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFP 605


>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
           putative
          Length = 242

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 194 SEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGPYTSS 322
           ++ R +R G G   G   GS P P R        T + PY S+
Sbjct: 14  AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSA 56


>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
           putative
          Length = 244

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 194 SEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGPYTSS 322
           ++ R +R G G   G   GS P P R        T + PY S+
Sbjct: 14  AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSA 56



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 191 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGP 310
           G  G     G G+GPG +R + PN  +S R AP ++   P
Sbjct: 21  GGAGPARGTGSGSGPGPTRRNNPN-RKSTRSAPYQSAKAP 59


>At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putative
           similar to ATP-binding-cassette transporter (ABC1)
           described in PMID:11156608
          Length = 470

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/67 (32%), Positives = 25/67 (37%)
 Frame = -2

Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYM 471
           RM  IE         I  E+GSF E+ E    +   K      V  L C   AEIK    
Sbjct: 273 RMNSIENTGQFERTLIVAEEGSFVEYSEGCTAISHDKNQLHAAVVELYCAEGAEIKYSTR 332

Query: 470 SRCVDDR 450
             C  DR
Sbjct: 333 GLCAGDR 339


>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198
           ++G  P  G GLG++R +  L +   IRDV  +P
Sbjct: 563 EYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 596


>At1g17210.1 68414.m02097 expressed protein distantly related to
           dentin phosphoryn [Homo sapiens] (GI:4322670)
          Length = 958

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 203 RDTRPGCGTGP--GASRGSAPNPARSRREAPSRTCAGPY 313
           +  R GC +GP    SR   P P+R +  A SR  +G Y
Sbjct: 287 QSARNGCPSGPARNQSRLQDPGPSRKQFSASSRKASGNY 325


>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
           alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
          Length = 902

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = -2

Query: 581 YEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEI 402
           Y F    PEM   + T+ IG P      P    SF   +C    +    ++ ++ G  + 
Sbjct: 283 YVFAGPSPEMVMNQYTELIGRPA-----PMPYWSFGFHQCRYGYKNVSDLEYVVDGYAKA 337

Query: 401 VGGSMRIWDHEELMEGYKHEGIDP 330
                 +W   + M+GYK   +DP
Sbjct: 338 GIPLEVMWTDIDYMDGYKDFTLDP 361


>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 802

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 407 EIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYT 309
           + +G   RI +  ELM+   H+GIDP+P  + T
Sbjct: 633 DTLGKKGRIAEATELMKKMLHKGIDPTPVTYRT 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,348
Number of Sequences: 28952
Number of extensions: 294174
Number of successful extensions: 921
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -