Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L19
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas... 114 7e-26
At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmi... 108 4e-24
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas... 102 2e-22
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as... 74 1e-13
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 70 2e-12
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as... 66 3e-11
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as... 66 3e-11
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f... 43 2e-04
At3g17310.2 68416.m02213 methyltransferase family protein simila... 35 0.070
At3g17310.1 68416.m02212 methyltransferase family protein simila... 35 0.070
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 35 0.070
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 31 0.87
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.87
At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putat... 31 0.87
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 31 0.87
At1g17210.1 68414.m02097 expressed protein distantly related to ... 29 4.6
At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical t... 28 6.1
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi... 28 6.1
>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
/ asparagine-tRNA ligase 1 (SYNC1) identical to
SP|Q9SW96
Length = 572
Score = 114 bits (274), Expect = 7e-26
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Frame = -2
Query: 659 PFKRMTYIEAIEYLR-ANNITKEDGSFYEFGEDIPEMPERKMTDAI-GVPILLCKFPAEI 486
PF R+TY +AIE L A KE + E+G D+ ER +T+ + P+++ +P I
Sbjct: 410 PFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGI 469
Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306
K+FYM R DD + ++DVL+P VGE++GGS R ++ + + + G+ PY WY D
Sbjct: 470 KAFYM-RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYEWYLD 528
Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 192
R++G+V H G+GLG ER + + +IRDV +PR+
Sbjct: 529 LRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRY 566
>At1g70980.1 68414.m08188 asparaginyl-tRNA synthetase, cytoplasmic,
putative / asparagine-tRNA ligase, putative similar to
SYNC1 protein GI:5670315 [SP|Q9SW96] from [Arabidopsis
thaliana]
Length = 571
Score = 108 bits (260), Expect = 4e-24
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Frame = -2
Query: 656 FKRMTYIEAIEYLR---ANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPA 492
FKR+TY EAIE L A D E+G D+ ER +T+ PI++ +P
Sbjct: 408 FKRVTYTEAIERLEKAVAQGKVVFDNKV-EWGIDLASEHERYLTEVEFDQKPIIVYNYPK 466
Query: 491 EIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWY 312
IK+FYM R DD + ++DVL+P VGE++GGS R ++ + + + G+ PY WY
Sbjct: 467 GIKAFYM-RLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPYEWY 525
Query: 311 TDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRF 192
D R++G+V H G+GLG ER + + +IRDV +PR+
Sbjct: 526 LDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRY 565
>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
nearly identical to SP|O48593
Length = 567
Score = 102 bits (245), Expect = 2e-22
Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 3/157 (1%)
Frame = -2
Query: 656 FKRMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAI--GVPILLCKFPAEIK 483
F ++ Y +AIE L N K+ ++G D+ ER +T+ G P+++ +P EIK
Sbjct: 408 FLQLGYTDAIEILLKAN--KKFDFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIK 465
Query: 482 SFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHE-GIDPSPYYWYTD 306
+FYM R DD + ++D+L+P +GE++GGS R + E++E E ++ Y+WY D
Sbjct: 466 AFYM-RENDDGKTVAAMDMLVPRIGELIGGSQRE-ERLEVLEARLDELKLNKESYWWYLD 523
Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195
R++GSVPH G+GLG ER + ++ +IRDV +PR
Sbjct: 524 LRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPR 560
>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative simialr to
aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
synthetases class II (D, K and N)
Length = 532
Score = 73.7 bits (173), Expect = 1e-13
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Frame = -2
Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPI-----LLCKFPAEI 486
R+T+ E I+ L KE G + D+ ERK+ + +L ++P+ +
Sbjct: 376 RLTFAEGIQML------KEAGEEVDPLGDLNTESERKLGQLVLEKYKTEFYMLHRYPSAV 429
Query: 485 KSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTD 306
+ FY +D + S DV + G EI+ G+ RI D E L + + GID Y D
Sbjct: 430 RPFYTMPYENDSNYSNSFDVFIRGE-EIMSGAQRIHDPELLEKRARECGIDVKTISTYID 488
Query: 305 QRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLERCT 177
++G+ PHGG+G+GLER + L +IR L+PR +R T
Sbjct: 489 AFRYGAPPHGGFGVGLERVVMLLCALNNIRKTSLFPRDSQRLT 531
>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
/ asparagine-tRNA ligase 2 (SYNC2) nearly identical to
SP|Q9SW95; HMM hit: tRNA synthetases class II
Length = 638
Score = 70.1 bits (164), Expect = 2e-12
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Frame = -2
Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGV-PILLCKFPAEIKSFY 474
R +Y E I L+ TK + E+G + +TD I P+++ +P IK FY
Sbjct: 481 RFSYTEVISLLQKATTTKFETK-PEWGVALTTEHLSYLTDEIYKGPVIVHTYPKAIKQFY 539
Query: 473 MSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYTDQRKF 294
+ R DD++ + D+++P VG ++ GS E L G + WY D R+
Sbjct: 540 V-RLNDDKKTVAAFDLVVPKVGVVITGSQNEERFEILDARIGESGFTREKFEWYLDLRRH 598
Query: 293 GSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPR 195
G+V H G L +E+ L + I+D +PR
Sbjct: 599 GTVKHSGISLSMEQMLLYATGLPDIKDAIPFPR 631
>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = -2
Query: 512 LLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGID 333
+L ++P ++ FY C D+ + S DV + G EI+ G+ R+ E L + GID
Sbjct: 447 ILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE-EIISGAQRVHIPEVLEQRAGECGID 505
Query: 332 PSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLER 183
Y D ++G+ HGG+G+GLER + +IR L+PR +R
Sbjct: 506 VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQR 555
>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = -2
Query: 512 LLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEIVGGSMRIWDHEELMEGYKHEGID 333
+L ++P ++ FY C D+ + S DV + G EI+ G+ R+ E L + GID
Sbjct: 447 ILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE-EIISGAQRVHIPEVLEQRAGECGID 505
Query: 332 PSPYYWYTDQRKFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYPRFLER 183
Y D ++G+ HGG+G+GLER + +IR L+PR +R
Sbjct: 506 VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFPRDPQR 555
>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
family protein similar to SP|P36419 Aspartyl-tRNA
synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
(AspRS) {Thermus thermophilus}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 664
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = -2
Query: 431 DVLMPGVGEIVGGSMRIWDHEELMEGYKHEGIDP----SPYYWYTDQRKFGSVPHGGYGL 264
D++ GV EI GGS+RI+ + + + GI P S + + + G+ PHGG
Sbjct: 555 DMVYNGV-EIGGGSLRIYKRDVQEKVLEIIGISPEEAESKFGYLLEALDMGAPPHGGIAY 613
Query: 263 GLERFLCWLLDRYHIRDVCLYPR 195
GL+R + L IRDV +P+
Sbjct: 614 GLDRMVMMLGGASSIRDVIAFPK 636
>At3g17310.2 68416.m02213 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 34.7 bits (76), Expect = 0.070
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 629 IEYLRANNITKEDG-SFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDD 453
+E L + T+ G SF+ E PE TD I + +L KFP + F + R D
Sbjct: 86 LEILTKSTETEPPGPSFHGLMEPKPEPDIEYETDRIRIALLTMKFPENLVDFALDRLGKD 145
Query: 452 RRLTESVDVLM 420
+ E VD ++
Sbjct: 146 TPIDEMVDFIV 156
>At3g17310.1 68416.m02212 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 34.7 bits (76), Expect = 0.070
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 629 IEYLRANNITKEDG-SFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDD 453
+E L + T+ G SF+ E PE TD I + +L KFP + F + R D
Sbjct: 86 LEILTKSTETEPPGPSFHGLMEPKPEPDIEYETDRIRIALLTMKFPENLVDFALDRLGKD 145
Query: 452 RRLTESVDVLM 420
+ E VD ++
Sbjct: 146 TPIDEMVDFIV 156
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198
++G P GG+GLG++R L D +I++V +P
Sbjct: 572 EYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFP 605
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 194 SEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGPYTSS 322
++ R +R G G G GS P P R T + PY S+
Sbjct: 14 AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSA 56
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 194 SEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGPYTSS 322
++ R +R G G G GS P P R T + PY S+
Sbjct: 14 AKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSA 56
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 191 GSEGRDTRPGCGTGPGASRGSAPNPARSRREAPSRTCAGP 310
G G G G+GPG +R + PN +S R AP ++ P
Sbjct: 21 GGAGPARGTGSGSGPGPTRRNNPN-RKSTRSAPYQSAKAP 59
>At5g44316.1 68418.m05426 ATP-binding-cassette transporter, putative
similar to ATP-binding-cassette transporter (ABC1)
described in PMID:11156608
Length = 470
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/67 (32%), Positives = 25/67 (37%)
Frame = -2
Query: 650 RMTYIEAIEYLRANNITKEDGSFYEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYM 471
RM IE I E+GSF E+ E + K V L C AEIK
Sbjct: 273 RMNSIENTGQFERTLIVAEEGSFVEYSEGCTAISHDKNQLHAAVVELYCAEGAEIKYSTR 332
Query: 470 SRCVDDR 450
C DR
Sbjct: 333 GLCAGDR 339
>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
family protein similar to SP|Q9RHV9 Lysyl-tRNA
synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
stearothermophilus}; contains Pfam profile: PF00152 tRNA
synthetases class II (D, K and N)
Length = 602
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 299 KFGSVPHGGYGLGLERFLCWLLDRYHIRDVCLYP 198
++G P G GLG++R + L + IRDV +P
Sbjct: 563 EYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP 596
>At1g17210.1 68414.m02097 expressed protein distantly related to
dentin phosphoryn [Homo sapiens] (GI:4322670)
Length = 958
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 203 RDTRPGCGTGP--GASRGSAPNPARSRREAPSRTCAGPY 313
+ R GC +GP SR P P+R + A SR +G Y
Sbjct: 287 QSARNGCPSGPARNQSRLQDPGPSRKQFSASSRKASGNY 325
>At5g11720.1 68418.m01369 alpha-glucosidase 1 (AGLU1) identical to
alpha-glucosidase 1 [Arabidopsis thaliana] GI:2323344
Length = 902
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = -2
Query: 581 YEFGEDIPEMPERKMTDAIGVPILLCKFPAEIKSFYMSRCVDDRRLTESVDVLMPGVGEI 402
Y F PEM + T+ IG P P SF +C + ++ ++ G +
Sbjct: 283 YVFAGPSPEMVMNQYTELIGRPA-----PMPYWSFGFHQCRYGYKNVSDLEYVVDGYAKA 337
Query: 401 VGGSMRIWDHEELMEGYKHEGIDP 330
+W + M+GYK +DP
Sbjct: 338 GIPLEVMWTDIDYMDGYKDFTLDP 361
>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 802
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 407 EIVGGSMRIWDHEELMEGYKHEGIDPSPYYWYT 309
+ +G RI + ELM+ H+GIDP+P + T
Sbjct: 633 DTLGKKGRIAEATELMKKMLHKGIDPTPVTYRT 665
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,441,348
Number of Sequences: 28952
Number of extensions: 294174
Number of successful extensions: 921
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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