Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L18
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718     31   1.5  
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    30   2.7  
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810...    28   8.2  

>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
          Length = 756

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 361 LRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTP-SKRKCLMKSKCLLTSPTRSTR 185
           L   +T P     R+P++SP+  +    T  ++ S TP SK+    K K L  SP  +  
Sbjct: 693 LEKEITMPRNRYWRTPVKSPVPAKKLEQTAQNKPSSTPKSKKVWKEKPKTLAPSPPETGG 752

Query: 184 K 182
           K
Sbjct: 753 K 753


>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
 Frame = -2

Query: 613 YTVEKKSLTK*KCPFPSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGP---- 446
           Y   K+S ++ +    S ++SR RS+ +  ++ R  ++++S R   ++S  +S  P    
Sbjct: 184 YDSAKRSRSRSRGRSHSRSISRSRSRSRSISRSRSRSYSRS-RSPRSRSASRSHSPVKER 242

Query: 445 TMYTCLSLTPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNL 278
           +     S +P   +SP++ P  +  P + +S   SP +S+  S   SP++   Q L
Sbjct: 243 SRSASQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSRSLSRSPSPVRDINQKL 298



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = -2

Query: 553 SRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ*PYTSQ 374
           S KRS+    ++ R  +H++S+ +  ++S+  S   +     S +P   +S ++    S 
Sbjct: 186 SAKRSR----SRSRGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRS-RSASR----SH 236

Query: 373 CPTKLRSPLTSPTRS--K*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSP 200
            P K RS   S +RS  K RSP RSP         KS+ KS  P K + L +S     SP
Sbjct: 237 SPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKS--PVKSRSLSRS----PSP 290

Query: 199 TRSTRKFKC 173
            R   +  C
Sbjct: 291 VRDINQKLC 299


>05_06_0276 +
           26878732-26879574,26879920-26880387,26880800-26881021,
           26881153-26881278,26881309-26881573,26881719-26881936
          Length = 713

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 355 SPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRK 236
           SP  SP RS  RSP R  +K Q ++  +S  +S +P++++
Sbjct: 67  SPRRSPVRSIGRSPQRDRVKEQVRSPKQSWSRSPSPARKR 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,735,690
Number of Sequences: 37544
Number of extensions: 326994
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)