Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L18
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 39 0.005
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 38 0.006
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 31 0.73
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 31 1.3
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 31 1.3
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 31 1.3
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 5.2
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 5.2
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 5.2
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 5.2
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 5.2
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 29 5.2
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 5.2
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 5.2
At2g04080.1 68415.m00391 MATE efflux family protein similar to h... 28 9.0
At2g04066.1 68415.m00389 MATE efflux protein-related similar to ... 28 9.0
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/90 (32%), Positives = 49/90 (54%)
Frame = -2
Query: 565 SPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ*P 386
SP+ SR RS+ + ++ R +H++S + L++SK + SL+ S+ KS + P
Sbjct: 207 SPSRSRSRSRSRSRSRGRGRSHSRS--RSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264
Query: 385 YTSQCPTKLRSPLTSPTRSK*RSPIRSPLK 296
+ P + S S +RS+ RSP +SP K
Sbjct: 265 DKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 38.3 bits (85), Expect = 0.006
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = -2
Query: 496 KSLRKCLTKSKYQ------STGPTMYTCLSLTPSMLKSP----TQ*PYTSQCPTKLRSPL 347
+S R+ L++S Q S PT + SL+ S ++SP ++ P S + RSP+
Sbjct: 529 RSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPV 588
Query: 346 TSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
S R RSP+RS K ++ + SR+S+ S+ + + + SP R R+
Sbjct: 589 RSSRRRISRSPVRSSRKSVSRSPIRLSRRSI--SRSPIRLSRRSISRSPVRGRRR 641
Score = 37.9 bits (84), Expect = 0.008
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = -2
Query: 490 LRKCLTKSKYQSTGPTMYTCLSLTPSML--KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RS 317
LR+ +S +S + LS +P L +S ++ P + RSP+ SP +S RS
Sbjct: 515 LRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRS 574
Query: 316 PIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
P+RS K ++ +SSR+ ++ S + KS + SP R +R+
Sbjct: 575 PVRSSRKSVSRSPVRSSRRRISRSPVRSSRKS--VSRSPIRLSRR 617
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 31.5 bits (68), Expect = 0.73
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = -2
Query: 421 TPSMLKSPTQ*PYT------SQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRK 260
TPSM+ SP+ P S P+ L SP TSP SP +P + + S+
Sbjct: 632 TPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPSTSP 691
Query: 259 SLTPSKRKCLMKSKCLLTSPTRS 191
S +PS S SP+ S
Sbjct: 692 SASPSVSPSAFPSASPSASPSAS 714
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/93 (22%), Positives = 48/93 (51%)
Frame = -2
Query: 568 PSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ* 389
P+ ++ FQ T+ + P+ T++ + ++++ QS T S + S +S +Q
Sbjct: 737 PNQSIGNGGDDFQTQTQSQSPSQTRA--QSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQS 794
Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQ 290
SQ ++ +S SP++++ +SP ++ + Q
Sbjct: 795 QSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/61 (26%), Positives = 36/61 (59%)
Frame = -2
Query: 421 TPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSK 242
+PS +S +Q SQ ++ +S S ++S+ +S +SP + Q Q+ +++ ++ +PS
Sbjct: 772 SPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQSPSS 831
Query: 241 R 239
+
Sbjct: 832 Q 832
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -2
Query: 337 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
+RS+ RS SP++ + + + SS +S SKRK K K SP +S R+
Sbjct: 833 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 884
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -2
Query: 337 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
+RS+ RS SP++ + + + SS +S SKRK K K SP +S R+
Sbjct: 803 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 854
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.7 bits (61), Expect = 5.2
Identities = 32/124 (25%), Positives = 48/124 (38%)
Frame = -2
Query: 568 PSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ* 389
PSP +S S +T P HT S S + P+ + + S SP+
Sbjct: 214 PSP-VSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHS 272
Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLL 209
P T + P+ SP SP +P +SP + S +S PS + +
Sbjct: 273 PATPKSPSPSSSPAQSPATPSPMTP-QSPSPVS----SPSPDQSAAPSDQSTPLAPSPSE 327
Query: 208 TSPT 197
T+PT
Sbjct: 328 TTPT 331
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = -2
Query: 406 KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 227
+SP++ S+ ++ RSP S +RS+ RS RSP + ++L +S KS + S R
Sbjct: 200 RSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSP---KAKSLRRSPAKSTSRSPRS-RS 255
Query: 226 KSKCLLTSP 200
+SK SP
Sbjct: 256 RSKSRSLSP 264
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -2
Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263
P S+ P + RSP S +RS+ S RSP++ + +++ + SR
Sbjct: 112 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 153
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -2
Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263
P S+ P + RSP S +RS+ S RSP++ + +++ + SR
Sbjct: 123 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 164
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = -2
Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263
P S+ P + RSP S +RS+ S RSP++ + +++ + SR
Sbjct: 153 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 194
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 203 PYPVYKEVQVPLVKEVPYPVKYHVP 129
P PVYK P+ K P PVK++ P
Sbjct: 87 PPPVYKSPPPPVYKSPPPPVKHYSP 111
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 203 PYPVYKEVQVPLVKEVPYPVKYHVP 129
P PVYK P+ K P PVK++ P
Sbjct: 87 PPPVYKSPPPPVYKSPPPPVKHYSP 111
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = -1
Query: 779 PXPXPYTVEKKFPLPSXIRQXPSIRT*PYTVKRKYLMKSSPR*QALRSQSQSAHSLHR*E 600
P P P T E K P + PS + P T K + SP+ Q + +S
Sbjct: 396 PNP-PRTSEPKPSKPEPVMPKPSDSSKPETPKTPE--QPSPKPQPPKHESPKPEEPENKH 452
Query: 599 EIPYEVKVPVPQP 561
E+P + + P PQP
Sbjct: 453 ELPKQKESPKPQP 465
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 418 PSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPS 245
P +PTQ P S T++ +P + +S+ SP+++P Q + + TPS
Sbjct: 649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPS 706
>At2g04080.1 68415.m00391 MATE efflux family protein similar to
hypothetical protein GB:AAC27412; contains Pfam profile
PF01554: Uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLVYGHWVGLFNM 413
F+ DG+ L+ R W G I ++ + LVG V L F W G W G+
Sbjct: 381 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVG 440
Query: 414 DGVRLRHVYIV-GPVDW 461
V+ + IV ++W
Sbjct: 441 SAVQATLLAIVTASMNW 457
>At2g04066.1 68415.m00389 MATE efflux protein-related similar to
multidrug secondary transporter-like TRANSPARENT TESTA
12 protein (Swiss-Prot:Q9LYT3) [Arabidopsis thaliana];
supported by tandem duplication of (GI:4734008)
(TIGR_Ath1:At2g04070) [Arabidopsis thaliana]
Length = 171
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLVYGHWVGLFNM 413
F+ DG+ L+ R W G I ++ + LVG V L F W G W G+
Sbjct: 76 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVG 135
Query: 414 DGVRLRHVYIV-GPVDW 461
V+ + IV ++W
Sbjct: 136 SAVQATLLAIVTASMNW 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,276
Number of Sequences: 28952
Number of extensions: 257607
Number of successful extensions: 680
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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