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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L18
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    39   0.005
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    38   0.006
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    31   0.73 
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    31   1.3  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    31   1.3  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    31   1.3  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    29   5.2  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    29   5.2  
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    29   5.2  
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    29   5.2  
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    29   5.2  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    29   5.2  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    29   5.2  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    29   5.2  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   9.0  
At2g04066.1 68415.m00389 MATE efflux protein-related similar to ...    28   9.0  

>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 29/90 (32%), Positives = 49/90 (54%)
 Frame = -2

Query: 565 SPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ*P 386
           SP+ SR RS+ +  ++ R  +H++S  + L++SK      +     SL+ S+ KS +  P
Sbjct: 207 SPSRSRSRSRSRSRSRGRGRSHSRS--RSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264

Query: 385 YTSQCPTKLRSPLTSPTRSK*RSPIRSPLK 296
              + P +  S   S +RS+ RSP +SP K
Sbjct: 265 DKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
 Frame = -2

Query: 496 KSLRKCLTKSKYQ------STGPTMYTCLSLTPSMLKSP----TQ*PYTSQCPTKLRSPL 347
           +S R+ L++S  Q      S  PT  +  SL+ S ++SP    ++ P  S   +  RSP+
Sbjct: 529 RSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPV 588

Query: 346 TSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
            S  R   RSP+RS  K   ++  + SR+S+  S+    +  + +  SP R  R+
Sbjct: 589 RSSRRRISRSPVRSSRKSVSRSPIRLSRRSI--SRSPIRLSRRSISRSPVRGRRR 641



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
 Frame = -2

Query: 490 LRKCLTKSKYQSTGPTMYTCLSLTPSML--KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RS 317
           LR+   +S  +S   +    LS +P  L  +S ++ P      +  RSP+ SP +S  RS
Sbjct: 515 LRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRS 574

Query: 316 PIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
           P+RS  K   ++  +SSR+ ++ S  +   KS  +  SP R +R+
Sbjct: 575 PVRSSRKSVSRSPVRSSRRRISRSPVRSSRKS--VSRSPIRLSRR 617


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = -2

Query: 421 TPSMLKSPTQ*PYT------SQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRK 260
           TPSM+ SP+  P        S  P+ L SP TSP      SP  +P      + + S+  
Sbjct: 632 TPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPSTSP 691

Query: 259 SLTPSKRKCLMKSKCLLTSPTRS 191
           S +PS       S     SP+ S
Sbjct: 692 SASPSVSPSAFPSASPSASPSAS 714


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
            protein-related / DCL protein-related similar to DCL
            protein, chloroplast precursor (Defective chloroplasts
            and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
            esculentum]
          Length = 839

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/93 (22%), Positives = 48/93 (51%)
 Frame = -2

Query: 568  PSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ* 389
            P+ ++      FQ  T+ + P+ T++  +  ++++ QS   T     S + S  +S +Q 
Sbjct: 737  PNQSIGNGGDDFQTQTQSQSPSQTRA--QSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQS 794

Query: 388  PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQ 290
               SQ  ++ +S   SP++++ +SP ++  + Q
Sbjct: 795  QSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/61 (26%), Positives = 36/61 (59%)
 Frame = -2

Query: 421 TPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSK 242
           +PS  +S +Q    SQ  ++ +S   S ++S+ +S  +SP + Q Q+ +++  ++ +PS 
Sbjct: 772 SPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQSPSS 831

Query: 241 R 239
           +
Sbjct: 832 Q 832


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -2

Query: 337 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
           +RS+ RS   SP++ + +  + SS +S   SKRK   K K    SP +S R+
Sbjct: 833 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 884


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -2

Query: 337 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182
           +RS+ RS   SP++ + +  + SS +S   SKRK   K K    SP +S R+
Sbjct: 803 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 854


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 32/124 (25%), Positives = 48/124 (38%)
 Frame = -2

Query: 568 PSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ* 389
           PSP +S   S    +T    P HT S       S   +  P+     + + S   SP+  
Sbjct: 214 PSP-VSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHS 272

Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLL 209
           P T + P+   SP  SP      +P +SP        + S  +S  PS +   +      
Sbjct: 273 PATPKSPSPSSSPAQSPATPSPMTP-QSPSPVS----SPSPDQSAAPSDQSTPLAPSPSE 327

Query: 208 TSPT 197
           T+PT
Sbjct: 328 TTPT 331


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = -2

Query: 406 KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 227
           +SP++    S+  ++ RSP  S +RS+ RS  RSP   + ++L +S  KS + S R    
Sbjct: 200 RSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSP---KAKSLRRSPAKSTSRSPRS-RS 255

Query: 226 KSKCLLTSP 200
           +SK    SP
Sbjct: 256 RSKSRSLSP 264


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263
           P  S+ P + RSP  S +RS+  S  RSP++ + +++ + SR
Sbjct: 112 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 153


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263
           P  S+ P + RSP  S +RS+  S  RSP++ + +++ + SR
Sbjct: 123 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 164


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263
           P  S+ P + RSP  S +RS+  S  RSP++ + +++ + SR
Sbjct: 153 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 194


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 203 PYPVYKEVQVPLVKEVPYPVKYHVP 129
           P PVYK    P+ K  P PVK++ P
Sbjct: 87  PPPVYKSPPPPVYKSPPPPVKHYSP 111


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 203 PYPVYKEVQVPLVKEVPYPVKYHVP 129
           P PVYK    P+ K  P PVK++ P
Sbjct: 87  PPPVYKSPPPPVYKSPPPPVKHYSP 111


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = -1

Query: 779 PXPXPYTVEKKFPLPSXIRQXPSIRT*PYTVKRKYLMKSSPR*QALRSQSQSAHSLHR*E 600
           P P P T E K   P  +   PS  + P T K     + SP+ Q  + +S          
Sbjct: 396 PNP-PRTSEPKPSKPEPVMPKPSDSSKPETPKTPE--QPSPKPQPPKHESPKPEEPENKH 452

Query: 599 EIPYEVKVPVPQP 561
           E+P + + P PQP
Sbjct: 453 ELPKQKESPKPQP 465



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 418 PSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPS 245
           P    +PTQ P  S   T++ +P +   +S+  SP+++P   Q    +    +  TPS
Sbjct: 649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPS 706


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 237 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLVYGHWVGLFNM 413
           F+ DG+   L+   R   W   G  I ++ + LVG  V   L F   W   G W G+   
Sbjct: 381 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVG 440

Query: 414 DGVRLRHVYIV-GPVDW 461
             V+   + IV   ++W
Sbjct: 441 SAVQATLLAIVTASMNW 457


>At2g04066.1 68415.m00389 MATE efflux protein-related similar to
           multidrug secondary transporter-like TRANSPARENT TESTA
           12 protein (Swiss-Prot:Q9LYT3) [Arabidopsis thaliana];
           supported by tandem duplication of  (GI:4734008)
           (TIGR_Ath1:At2g04070) [Arabidopsis thaliana]
          Length = 171

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 237 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLVYGHWVGLFNM 413
           F+ DG+   L+   R   W   G  I ++ + LVG  V   L F   W   G W G+   
Sbjct: 76  FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVG 135

Query: 414 DGVRLRHVYIV-GPVDW 461
             V+   + IV   ++W
Sbjct: 136 SAVQATLLAIVTASMNW 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,291,276
Number of Sequences: 28952
Number of extensions: 257607
Number of successful extensions: 680
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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