BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L18 (848 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 39 0.005 At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 38 0.006 At5g27870.1 68418.m03343 pectinesterase family protein similar t... 31 0.73 At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 31 1.3 At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 31 1.3 At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 31 1.3 At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 5.2 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 5.2 At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 5.2 At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 5.2 At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 5.2 At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 29 5.2 At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 5.2 At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 5.2 At2g04080.1 68415.m00391 MATE efflux family protein similar to h... 28 9.0 At2g04066.1 68415.m00389 MATE efflux protein-related similar to ... 28 9.0 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 38.7 bits (86), Expect = 0.005 Identities = 29/90 (32%), Positives = 49/90 (54%) Frame = -2 Query: 565 SPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ*P 386 SP+ SR RS+ + ++ R +H++S + L++SK + SL+ S+ KS + P Sbjct: 207 SPSRSRSRSRSRSRSRGRGRSHSRS--RSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264 Query: 385 YTSQCPTKLRSPLTSPTRSK*RSPIRSPLK 296 + P + S S +RS+ RSP +SP K Sbjct: 265 DKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294 >At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein weak similarity to CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam profile PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type Length = 837 Score = 38.3 bits (85), Expect = 0.006 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Frame = -2 Query: 496 KSLRKCLTKSKYQ------STGPTMYTCLSLTPSMLKSP----TQ*PYTSQCPTKLRSPL 347 +S R+ L++S Q S PT + SL+ S ++SP ++ P S + RSP+ Sbjct: 529 RSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPV 588 Query: 346 TSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182 S R RSP+RS K ++ + SR+S+ S+ + + + SP R R+ Sbjct: 589 RSSRRRISRSPVRSSRKSVSRSPIRLSRRSI--SRSPIRLSRRSISRSPVRGRRR 641 Score = 37.9 bits (84), Expect = 0.008 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Frame = -2 Query: 490 LRKCLTKSKYQSTGPTMYTCLSLTPSML--KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RS 317 LR+ +S +S + LS +P L +S ++ P + RSP+ SP +S RS Sbjct: 515 LRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRS 574 Query: 316 PIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182 P+RS K ++ +SSR+ ++ S + KS + SP R +R+ Sbjct: 575 PVRSSRKSVSRSPVRSSRRRISRSPVRSSRKS--VSRSPIRLSRR 617 >At5g27870.1 68418.m03343 pectinesterase family protein similar to pectinesterase (EC 3.1.1.11) from Salix gilgiana GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam profile PF01095 pectinesterase Length = 732 Score = 31.5 bits (68), Expect = 0.73 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Frame = -2 Query: 421 TPSMLKSPTQ*PYT------SQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRK 260 TPSM+ SP+ P S P+ L SP TSP SP +P + + S+ Sbjct: 632 TPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPSTSP 691 Query: 259 SLTPSKRKCLMKSKCLLTSPTRS 191 S +PS S SP+ S Sbjct: 692 SASPSVSPSAFPSASPSASPSAS 714 >At2g40040.1 68415.m04920 defective chloroplasts and leaves protein-related / DCL protein-related similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon esculentum] Length = 839 Score = 30.7 bits (66), Expect = 1.3 Identities = 21/93 (22%), Positives = 48/93 (51%) Frame = -2 Query: 568 PSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ* 389 P+ ++ FQ T+ + P+ T++ + ++++ QS T S + S +S +Q Sbjct: 737 PNQSIGNGGDDFQTQTQSQSPSQTRA--QSPSQAQAQSPSQTQSQSQSQSQSQSQSQSQS 794 Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQ 290 SQ ++ +S SP++++ +SP ++ + Q Sbjct: 795 QSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827 Score = 28.3 bits (60), Expect = 6.8 Identities = 16/61 (26%), Positives = 36/61 (59%) Frame = -2 Query: 421 TPSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSK 242 +PS +S +Q SQ ++ +S S ++S+ +S +SP + Q Q+ +++ ++ +PS Sbjct: 772 SPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQSPSS 831 Query: 241 R 239 + Sbjct: 832 Q 832 >At1g70620.2 68414.m08137 cyclin-related contains weak similarity to Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I) [Bos taurus] Length = 884 Score = 30.7 bits (66), Expect = 1.3 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = -2 Query: 337 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182 +RS+ RS SP++ + + + SS +S SKRK K K SP +S R+ Sbjct: 833 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 884 >At1g70620.1 68414.m08138 cyclin-related contains weak similarity to Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I) [Bos taurus] Length = 897 Score = 30.7 bits (66), Expect = 1.3 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = -2 Query: 337 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 182 +RS+ RS SP++ + + + SS +S SKRK K K SP +S R+ Sbjct: 803 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 854 >At5g53870.1 68418.m06701 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain Length = 370 Score = 28.7 bits (61), Expect = 5.2 Identities = 32/124 (25%), Positives = 48/124 (38%) Frame = -2 Query: 568 PSPTLSRKRSQFQ*NTKLRCPNHTKSLRKCLTKSKYQSTGPTMYTCLSLTPSMLKSPTQ* 389 PSP +S S +T P HT S S + P+ + + S SP+ Sbjct: 214 PSP-VSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHS 272 Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLL 209 P T + P+ SP SP +P +SP + S +S PS + + Sbjct: 273 PATPKSPSPSSSPAQSPATPSPMTP-QSPSPVS----SPSPDQSAAPSDQSTPLAPSPSE 327 Query: 208 TSPT 197 T+PT Sbjct: 328 TTPT 331 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 28.7 bits (61), Expect = 5.2 Identities = 24/69 (34%), Positives = 38/69 (55%) Frame = -2 Query: 406 KSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 227 +SP++ S+ ++ RSP S +RS+ RS RSP + ++L +S KS + S R Sbjct: 200 RSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSP---KAKSLRRSPAKSTSRSPRS-RS 255 Query: 226 KSKCLLTSP 200 +SK SP Sbjct: 256 RSKSRSLSP 264 >At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 249 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -2 Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263 P S+ P + RSP S +RS+ S RSP++ + +++ + SR Sbjct: 112 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 153 >At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 260 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -2 Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263 P S+ P + RSP S +RS+ S RSP++ + +++ + SR Sbjct: 123 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 164 >At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 290 Score = 28.7 bits (61), Expect = 5.2 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -2 Query: 388 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 263 P S+ P + RSP S +RS+ S RSP++ + +++ + SR Sbjct: 153 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 194 >At1g76930.2 68414.m08956 proline-rich extensin-like family protein contains extensin-like region, Pfam:PF04554 Length = 256 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 203 PYPVYKEVQVPLVKEVPYPVKYHVP 129 P PVYK P+ K P PVK++ P Sbjct: 87 PPPVYKSPPPPVYKSPPPPVKHYSP 111 >At1g76930.1 68414.m08955 proline-rich extensin-like family protein contains extensin-like region, Pfam:PF04554 Length = 293 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 203 PYPVYKEVQVPLVKEVPYPVKYHVP 129 P PVYK P+ K P PVK++ P Sbjct: 87 PPPVYKSPPPPVYKSPPPPVKHYSP 111 >At1g49490.1 68414.m05547 leucine-rich repeat family protein / extensin family protein contains similarity to disease resistance protein GI:3894383 from [Lycopersicon esculentum]; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 847 Score = 28.7 bits (61), Expect = 5.2 Identities = 22/73 (30%), Positives = 31/73 (42%) Frame = -1 Query: 779 PXPXPYTVEKKFPLPSXIRQXPSIRT*PYTVKRKYLMKSSPR*QALRSQSQSAHSLHR*E 600 P P P T E K P + PS + P T K + SP+ Q + +S Sbjct: 396 PNP-PRTSEPKPSKPEPVMPKPSDSSKPETPKTPE--QPSPKPQPPKHESPKPEEPENKH 452 Query: 599 EIPYEVKVPVPQP 561 E+P + + P PQP Sbjct: 453 ELPKQKESPKPQP 465 Score = 27.9 bits (59), Expect = 9.0 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -2 Query: 418 PSMLKSPTQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPS 245 P +PTQ P S T++ +P + +S+ SP+++P Q + + TPS Sbjct: 649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPS 706 >At2g04080.1 68415.m00391 MATE efflux family protein similar to hypothetical protein GB:AAC27412; contains Pfam profile PF01554: Uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 9.0 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +3 Query: 237 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLVYGHWVGLFNM 413 F+ DG+ L+ R W G I ++ + LVG V L F W G W G+ Sbjct: 381 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVG 440 Query: 414 DGVRLRHVYIV-GPVDW 461 V+ + IV ++W Sbjct: 441 SAVQATLLAIVTASMNW 457 >At2g04066.1 68415.m00389 MATE efflux protein-related similar to multidrug secondary transporter-like TRANSPARENT TESTA 12 protein (Swiss-Prot:Q9LYT3) [Arabidopsis thaliana]; supported by tandem duplication of (GI:4734008) (TIGR_Ath1:At2g04070) [Arabidopsis thaliana] Length = 171 Score = 27.9 bits (59), Expect = 9.0 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = +3 Query: 237 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLVYGHWVGLFNM 413 F+ DG+ L+ R W G I ++ + LVG V L F W G W G+ Sbjct: 76 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVG 135 Query: 414 DGVRLRHVYIV-GPVDW 461 V+ + IV ++W Sbjct: 136 SAVQATLLAIVTASMNW 152 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,291,276 Number of Sequences: 28952 Number of extensions: 257607 Number of successful extensions: 680 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 608 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1970388800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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