BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L17 (875 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 29 0.87 SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 29 0.87 SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 28 1.5 SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 28 2.0 SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.7 SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 3.5 SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 27 4.6 SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 26 6.1 SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 8.1 SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 8.1 >SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 860 Score = 29.1 bits (62), Expect = 0.87 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -3 Query: 246 LDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKP 121 +DE +S S E +K G D+E +++ NE + E+KP Sbjct: 739 MDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKP 780 >SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 29.1 bits (62), Expect = 0.87 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKD 199 + PLEK+ ++ E E +R + +D K LE E+D Sbjct: 10 DAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQD 48 >SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 28.3 bits (60), Expect = 1.5 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Frame = -3 Query: 318 GEEPLEKMTESISETEDERSYTPCLDENKSKDTSLET-------EKDKGLEGLDTEMISE 160 G + T+S S + E + +P L + K +T ++D+ ++ L ++ S+ Sbjct: 81 GNTSITHETQSTSRGQ-EATTSPSLSASHEKPARPQTGEGSDNEDEDEDIDALIEDLYSQ 139 Query: 159 DEGNEMFSEEDKPKSVGA 106 D+ E EE+ P GA Sbjct: 140 DQEEEQVEEEESPGPAGA 157 >SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizosaccharomyces pombe|chr 1|||Manual Length = 302 Score = 27.9 bits (59), Expect = 2.0 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEM-ISEDEGNE 145 EE E E +S+ EDE + L++ D S+ET + + E ++E EDE N+ Sbjct: 204 EEREEAELEFVSDDEDEEEISD-LEDWLGSDQSMETSESEEEESSESESDEDEDEDNK 260 >SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 682 Score = 27.5 bits (58), Expect = 2.7 Identities = 25/78 (32%), Positives = 34/78 (43%) Frame = -3 Query: 351 DRERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTE 172 D E AS S + + E++T+ E+EDE Y P E + E D E Sbjct: 103 DNEEVASASSKSTKS-EELTDE--ESEDEEVYDPARGEGIISTSESSDESDAESETEAQP 159 Query: 171 MISEDEGNEMFSEEDKPK 118 ISE G E EE+ P+ Sbjct: 160 EISELAGIE--PEENIPR 175 >SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 738 Score = 27.1 bits (57), Expect = 3.5 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = -2 Query: 475 PAADGGENVKDNRTIPSSDVLETAHKSDHTEQSXLGDVRARRPRATRLCVSAGRGAAGED 296 P+ + NV +N T P L T +K ++ G V+ R P+A R C + D Sbjct: 248 PSPNRSLNVSNNTTPP----LSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDNKKCD 303 Query: 295 D 293 D Sbjct: 304 D 304 >SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual Length = 797 Score = 26.6 bits (56), Expect = 4.6 Identities = 20/74 (27%), Positives = 34/74 (45%) Frame = -3 Query: 348 RERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEM 169 R+ P V E+ ++ T+ E E+ RSY ++KD +D LE + + Sbjct: 374 RDIPHPVGLYAEQAVKIKTKEPLEGEELRSYQELEFSKRNKDA-----EDTALEFRNRTI 428 Query: 168 ISEDEGNEMFSEED 127 + ED + SE+D Sbjct: 429 LDEDLSSSSSSEDD 442 >SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 411 Score = 26.2 bits (55), Expect = 6.1 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = -3 Query: 297 MTESISETEDERSYTPC-LDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKP 121 +T + ET D Y ++ +S E +KD G +++EG+E+ + P Sbjct: 83 LTNELYETHDSSDYFGTYMEREESGHDEEEADKDASFTGYYNSRNNDEEGSELADSQMLP 142 >SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 25.8 bits (54), Expect = 8.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = -3 Query: 294 TESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDE 154 T S +E DE +++ +E S DT+L L GLD E+E Sbjct: 135 TSSTTENLDELNFST--EELSSFDTTLLNSDTSKLSGLDDSSFMEEE 179 >SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosaccharomyces pombe|chr 3|||Manual Length = 822 Score = 25.8 bits (54), Expect = 8.1 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -3 Query: 246 LDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKPK 118 LDE +S+ + +K K + D + D+G+ SE+DK K Sbjct: 138 LDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKK 180 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,378,337 Number of Sequences: 5004 Number of extensions: 37974 Number of successful extensions: 144 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 141 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 144 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 438479610 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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