Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L17
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    29   0.87 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    29   0.87 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    28   1.5  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    28   2.0  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   2.7  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   3.5  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   4.6  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   6.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   8.1  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   8.1  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 246 LDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKP 121
           +DE +S   S E +K     G D+E  +++  NE  + E+KP
Sbjct: 739 MDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKP 780


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKD 199
           + PLEK+  ++ E E +R  +  +D    K   LE E+D
Sbjct: 10  DAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQD 48


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = -3

Query: 318 GEEPLEKMTESISETEDERSYTPCLDENKSKDTSLET-------EKDKGLEGLDTEMISE 160
           G   +   T+S S  + E + +P L  +  K    +T       ++D+ ++ L  ++ S+
Sbjct: 81  GNTSITHETQSTSRGQ-EATTSPSLSASHEKPARPQTGEGSDNEDEDEDIDALIEDLYSQ 139

Query: 159 DEGNEMFSEEDKPKSVGA 106
           D+  E   EE+ P   GA
Sbjct: 140 DQEEEQVEEEESPGPAGA 157


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEM-ISEDEGNE 145
           EE  E   E +S+ EDE   +  L++    D S+ET + +  E  ++E    EDE N+
Sbjct: 204 EEREEAELEFVSDDEDEEEISD-LEDWLGSDQSMETSESEEEESSESESDEDEDEDNK 260


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 25/78 (32%), Positives = 34/78 (43%)
 Frame = -3

Query: 351 DRERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTE 172
           D E  AS S +  +  E++T+   E+EDE  Y P   E     +    E D   E     
Sbjct: 103 DNEEVASASSKSTKS-EELTDE--ESEDEEVYDPARGEGIISTSESSDESDAESETEAQP 159

Query: 171 MISEDEGNEMFSEEDKPK 118
            ISE  G E   EE+ P+
Sbjct: 160 EISELAGIE--PEENIPR 175


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 475 PAADGGENVKDNRTIPSSDVLETAHKSDHTEQSXLGDVRARRPRATRLCVSAGRGAAGED 296
           P+ +   NV +N T P    L T +K     ++  G V+ R P+A R C    +     D
Sbjct: 248 PSPNRSLNVSNNTTPP----LSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDNKKCD 303

Query: 295 D 293
           D
Sbjct: 304 D 304


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -3

Query: 348 RERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEM 169
           R+ P  V    E+ ++  T+   E E+ RSY       ++KD      +D  LE  +  +
Sbjct: 374 RDIPHPVGLYAEQAVKIKTKEPLEGEELRSYQELEFSKRNKDA-----EDTALEFRNRTI 428

Query: 168 ISEDEGNEMFSEED 127
           + ED  +   SE+D
Sbjct: 429 LDEDLSSSSSSEDD 442


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -3

Query: 297 MTESISETEDERSYTPC-LDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKP 121
           +T  + ET D   Y    ++  +S     E +KD    G      +++EG+E+   +  P
Sbjct: 83  LTNELYETHDSSDYFGTYMEREESGHDEEEADKDASFTGYYNSRNNDEEGSELADSQMLP 142


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 294 TESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDE 154
           T S +E  DE +++   +E  S DT+L       L GLD     E+E
Sbjct: 135 TSSTTENLDELNFST--EELSSFDTTLLNSDTSKLSGLDDSSFMEEE 179


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 246 LDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKPK 118
           LDE +S+ +    +K K  +  D    + D+G+   SE+DK K
Sbjct: 138 LDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKK 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,337
Number of Sequences: 5004
Number of extensions: 37974
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)