BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L17 (875 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 6.5 AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 6.5 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 8.5 AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 8.5 >AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. Length = 400 Score = 22.2 bits (45), Expect = 6.5 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 282 SETEDERSYTPCLDENKSKDTSLETEKDKGLEGL 181 S ED SY + + S+D S E +KD+ + L Sbjct: 237 SRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQL 270 >AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex determiner protein. Length = 418 Score = 22.2 bits (45), Expect = 6.5 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -3 Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDK 196 EE + S S +++SY K ++TS E +DK Sbjct: 269 EERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDK 308 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 21.8 bits (44), Expect = 8.5 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Frame = -1 Query: 71 CGRRPST-ARRTQRTPKAKEKKK 6 CGRRPST + P+ K+K Sbjct: 47 CGRRPSTFGSSNEALPQPISKRK 69 >AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. Length = 289 Score = 21.8 bits (44), Expect = 8.5 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Frame = -1 Query: 71 CGRRPST-ARRTQRTPKAKEKKK 6 CGRRPST + P+ K+K Sbjct: 47 CGRRPSTFGSSNEALPQPISKRK 69 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 165,757 Number of Sequences: 438 Number of extensions: 2777 Number of successful extensions: 5 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 28402218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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