Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L17
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.5  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 282 SETEDERSYTPCLDENKSKDTSLETEKDKGLEGL 181
           S  ED  SY    + + S+D S E +KD+  + L
Sbjct: 237 SRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQL 270


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDK 196
           EE   +   S S   +++SY       K ++TS E  +DK
Sbjct: 269 EERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDK 308


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 71  CGRRPST-ARRTQRTPKAKEKKK 6
           CGRRPST     +  P+   K+K
Sbjct: 47  CGRRPSTFGSSNEALPQPISKRK 69


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 71  CGRRPST-ARRTQRTPKAKEKKK 6
           CGRRPST     +  P+   K+K
Sbjct: 47  CGRRPSTFGSSNEALPQPISKRK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,757
Number of Sequences: 438
Number of extensions: 2777
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)