Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L17
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10670.1 68417.m01743 transcription elongation factor-related... 36 0.027
At3g48710.1 68416.m05319 expressed protein putative protein - Ar... 34 0.11
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 34 0.14
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 34 0.14
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 33 0.19
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 32 0.44
At1g44810.1 68414.m05133 expressed protein contains Pfam profil... 32 0.44
At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containi... 31 0.76
At5g53750.1 68418.m06679 expressed protein strong similarity to ... 30 1.8
At5g41320.1 68418.m05022 expressed protein 30 1.8
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof... 30 1.8
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 30 1.8
At1g69070.1 68414.m07903 expressed protein 30 1.8
At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related... 30 2.3
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 29 3.1
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 29 3.1
At2g12875.1 68415.m01402 hypothetical protein 29 3.1
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 29 4.1
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 29 4.1
At1g56660.1 68414.m06516 expressed protein 29 4.1
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049... 29 5.4
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo... 29 5.4
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 5.4
At1g29240.1 68414.m03576 expressed protein contains Pfam profile... 29 5.4
At5g03710.1 68418.m00331 hypothetical protein 28 7.1
At3g19370.1 68416.m02457 expressed protein 28 7.1
At1g23440.2 68414.m02936 pyrrolidone-carboxylate peptidase famil... 28 7.1
At1g23440.1 68414.m02937 pyrrolidone-carboxylate peptidase famil... 28 7.1
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 28 9.4
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof... 28 9.4
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi... 28 9.4
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 28 9.4
At2g14140.1 68415.m01575 hypothetical protein similar to At2g049... 28 9.4
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 36.3 bits (80), Expect = 0.027
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = -3
Query: 327 SPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEM----ISE 160
S +G EP + ES E+EDE S + DE + +D+ E+E++KG + E
Sbjct: 365 SDKGYEPSDVEVES--ESEDETSESESDDEEEEEDSEQESEEEKGKTWAELEREATNADR 422
Query: 159 DEGNEMFSEEDKPK 118
+ G E SEE++ +
Sbjct: 423 EHGVESDSEEERKR 436
>At3g48710.1 68416.m05319 expressed protein putative protein -
Arabidopsis thaliana, EMBL:AL078465.1
Length = 462
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 348 RERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLE---GLD 178
+E+P GE + +E +++ E P + NKS+DT E EKDK E D
Sbjct: 244 QEQPTETEGNGESDVG--SEGTNDSNGEDDVAPEEENNKSEDTETEDEKDKAKEKTKSTD 301
Query: 177 TEMISEDEGNEMFSEEDKPKSVGA 106
+ +S+ E + E++ G+
Sbjct: 302 KKRLSKRTKKEKPAAEEEKSIKGS 325
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = -3
Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFS 136
E+ +E T+ ++E E E T DEN+ K+ E EK+ E +D + ++E N+
Sbjct: 221 EDDVEADTK-VAEPEVEDKKTESKDENEDKEEEKEDEKE---ESMDDKEDEKEESNDDDK 276
Query: 135 EEDKPKS 115
E++K +S
Sbjct: 277 EDEKEES 283
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -3
Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTS---LETEKDKGLEGLDTEMISED 157
EEPL+ E++SE +D + DEN KDT E + ++ L+ DTE + ++
Sbjct: 531 EEPLKDEQENVSEAKDVVTKLAAEDENIKKDTDTPVAEGKSEETLKETDTESVEKE 586
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -3
Query: 327 SPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGN 148
+P + K ES+ ET E+ +E K + E EK+K E E + E+E
Sbjct: 314 TPEKVDTESKEVESVEETTQEKE-EEVKEEGKERVEEEEKEKEKVKEDDQKEKVEEEEKE 372
Query: 147 EMFSEEDKPK 118
++ +E+K K
Sbjct: 373 KVKGDEEKEK 382
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -3
Query: 330 VSPRGEEPLEKMTESISETEDERSYTPCLDENKSKD-TSLETEKDKGLEGLDTEMISE-- 160
+ + EE E+ +++E+E +DEN++ + E+++ + +E E E
Sbjct: 281 IEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKEVESVEETTQEKEEEVK 340
Query: 159 DEGNEMFSEEDKPK 118
+EG E EE+K K
Sbjct: 341 EEGKERVEEEEKEK 354
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = -3
Query: 315 EEPLEKM---TESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNE 145
+EP+E+ TE+I E+ R T +EN+ T +E++K++G LDT + +EG +
Sbjct: 1866 DEPVEESPTETETIPTEEESRDQTE--EENQEPLTDMESDKEEGELDLDT-LEDLEEGTD 1922
Query: 144 MFSEEDKPK 118
+ S P+
Sbjct: 1923 VASMMRSPE 1931
>At1g44810.1 68414.m05133 expressed protein contains Pfam profile:
PF04504 protein of unknown function, DUF573
Length = 296
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -3
Query: 303 EKMTESISETEDERSY----TPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFS 136
E + E IS EDE+ + + +EN+ KD S +T L TE + D G+E S
Sbjct: 19 EDVDEEISSGEDEKEHISNSSSSEEENELKDLSTQT-----LNSPSTEAPTLDSGSETNS 73
Query: 135 EEDKP 121
+ DKP
Sbjct: 74 DSDKP 78
>At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 823
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 498 ASASVHLLGRYRARANFRSLF--VPXRDEGIW 587
A++ +HL RY+A N R LF +P RD G W
Sbjct: 188 AASLIHLYSRYKAVGNARILFDEMPVRDMGSW 219
>At5g53750.1 68418.m06679 expressed protein strong similarity to
unknown protein (pir||T08938)
Length = 427
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 275 VSLIDSVIFSSGSSPRGDTEAGRSRSPGS-DVSEXGLLRVIRFMRSLQHITARYSSVIFY 451
+SLIDS+ SSGSS ++ AG++R S S R+ R +S+ + R SS++
Sbjct: 309 ISLIDSLSLSSGSSSDEESPAGKTRMTSSYGRSVSSAARMAR--KSVAIVCNRKSSLMAV 366
Query: 452 VFTSVGCRLA 481
+ ++ R++
Sbjct: 367 MIQAIAHRVS 376
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 348 RERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSL 214
RE+P R + E E + + + T C+++NK KD ++
Sbjct: 57 REQPVKTRKRRSKKDETKPEKVKQVRKRKPKTVCVEDNKKKDETV 101
>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 734
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 330 VSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEG 151
V+P E ++ I E + R +ENK +D + E E K L + E ISE+
Sbjct: 7 VTPSSSESEDERVTIIREADMNREEVAA-EENKFEDENCEQEPPKNLHEPEEEKISEEVD 65
Query: 150 NE 145
+E
Sbjct: 66 DE 67
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -3
Query: 321 RGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEM 142
+ E+ K + SET ++ T +N S E EKD G E + E + ++
Sbjct: 100 KSEDEQRKSAKEKSETTSSKTQTQETQQNNDDKISEEKEKDNGKENQTVQESEEGQMKKV 159
Query: 141 FSEEDK 124
E +K
Sbjct: 160 VKEFEK 165
>At1g69070.1 68414.m07903 expressed protein
Length = 901
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = -3
Query: 348 RERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEM 169
R RP+ + EE +K E + E+ER E S D E ++ + L T +
Sbjct: 266 RARPSERTKTPEEIAQKEREKLEALEEERKKRMQETEELS-DGDEEIGGEESTKRL-TVI 323
Query: 168 ISEDEGNEMFSEEDKPK 118
+D G+ EEDKPK
Sbjct: 324 SGDDLGDSFSVEEDKPK 340
>At4g00610.1 68417.m00085 DNA-binding storekeeper protein-related
similar to storekeeper protein GI:14268476 [Solanum
tuberosum]
Length = 328
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = -3
Query: 345 ERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMI 166
++P+ V+ ++PLE + + SE E+E + + ++ E+E D E +
Sbjct: 63 KKPSGVTSPVKKPLEAVASTSSEEEEED------EPSSDSESGSESESDTEAEPMTLAAA 116
Query: 165 SEDEGNEMFSEEDKPK 118
+ NE E KP+
Sbjct: 117 APSSSNEKRQSEGKPE 132
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 309 PLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEE 130
P ++ + ET R+ P L E ++ E +++ E + E E+EG E EE
Sbjct: 53 PTKETAPATKETAPTRTEEPSLTEQDPENVEEEESEEEEKEEEEKEEEEEEEGEEEEEEE 112
Query: 129 DK 124
++
Sbjct: 113 EE 114
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 240 ENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKPKS 115
+ K+K ++ E D LE L+ ++ +D G E E +KPKS
Sbjct: 1399 KKKTKRIRIDAEGDATLEELE-DVDRQDNGQEPLEEPEKPKS 1439
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNE 145
EEP+ +T + E+E+SY +E KD ++E+++ E E E+E E
Sbjct: 182 EEPILALTPVLEAVEEEKSYKN-EEEKSEKDEEEKSEEEESEEEEKEEEEKEEEKEE 237
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 342 RPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGL--DTEM 169
+PA P +E E E SE +D+ +DE+ S D E +D+ E E
Sbjct: 63 KPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKKPEP 122
Query: 168 ISEDEGNEMFSE 133
I++ NE S+
Sbjct: 123 INKKRPNESVSK 134
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 342 RPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGL--DTEM 169
+PA P +E E E SE +D+ +DE+ S D E +D+ E E
Sbjct: 146 KPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETPKKPEP 205
Query: 168 ISEDEGNEMFSE 133
I++ NE S+
Sbjct: 206 INKKRPNESVSK 217
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -3
Query: 351 DRERPASVSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTE 172
D E+ +E EK ++ + E + S C +E K K + EKD+ E D +
Sbjct: 228 DEEKKKEHDETDQEMKEKDSKKNKKKEKDES---CAEEKKKKPDKEKKEKDESTEKEDKK 284
Query: 171 MISEDEGNEMFSEEDKPK 118
+ + E +ED+ K
Sbjct: 285 LKGKKGKGEKPEKEDEGK 302
>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
At5g34895, At2g02200
Length = 671
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = -3
Query: 315 EEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFS 136
EE +E+ E ETED+++Y L +++ T+ TEK+ + +T + ++E E
Sbjct: 435 EENVEEHDEH-DETEDQKAYV-ILSDDEDNGTA-PTEKESQPQKEETTEVPKEENVEEHD 491
Query: 135 EEDK 124
E D+
Sbjct: 492 EHDE 495
>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
similarity to Rab6 GTPase activating protein, GAPCenA
[Homo sapiens] GI:12188746; contains Pfam profile
PF00566: TBC domain
Length = 882
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 282 SETEDERSYTPCLDENKSKDTSLETEK---DKGLEGLDTEMISEDEGNEMFSEEDKPKSV 112
SE + E+ T + + SK+T E DK L DTE + ++E + S++DK SV
Sbjct: 107 SEQQLEQDRTETVGD-VSKETEPAEEALVLDKSLRS-DTESVKDEEEEKFESDKDKESSV 164
Query: 111 GA 106
G+
Sbjct: 165 GS 166
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 279 ETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKPKSVGA 106
E ED+ L + K KD +K+K ++ + ++ S D+ + EE+K K V A
Sbjct: 26 EPEDDIDTKVSLKKQK-KDVIAAVQKEKAVKKVPKKVESSDDSDSESEEEEKAKKVPA 82
>At1g29240.1 68414.m03576 expressed protein contains Pfam profile:
PF05097 protein of unknown function (DUF688)
Length = 577
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = -3
Query: 273 EDERSYTPCLDENKSKD---TSLETEKDKGLEGLDTEMISEDEGNEMFSE 133
E+E+ +TPCL K+ D T L++ K K +E S+D+ +++FS+
Sbjct: 93 EEEQVFTPCLPPGKAVDANMTRLQSSKGKQVEE------SDDDEDDVFSD 136
>At5g03710.1 68418.m00331 hypothetical protein
Length = 81
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 318 GEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMF 139
GEE E+ E E E+E +E + ++ E E+++ E + E E+E E
Sbjct: 5 GEEEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 63
Query: 138 SEEDKPK 118
EED+ +
Sbjct: 64 EEEDRER 70
>At3g19370.1 68416.m02457 expressed protein
Length = 704
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 327 SPRGEEPLEKMTESISETEDERSYTPCLDENKSK-DTSLETEKDKGLEGLDTEM 169
S +E +K+ ES+ + + + L ENK K + +ETEK E LDT++
Sbjct: 480 SDEKQELRKKLEESVEKIRNLEAEMKTLRENKEKVEAEMETEKSM-KEDLDTKL 532
>At1g23440.2 68414.m02936 pyrrolidone-carboxylate peptidase family
protein similar to Pyrrolidone-carboxylate peptidase
(Swiss-Prot:O58321) [Pyrococcus horikoshii]; contains
Prosite PS00141: Eukaryotic and viral aspartyl proteases
active site
Length = 94
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 315 EEPLEKMTESISETEDERSYTP--CLDENKSKDTSLETEKDKGLEGLDTEMISEDEGN 148
E P EK+ + ++R CL DT+ E K K E L++ ++S D+ N
Sbjct: 24 ENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNN 81
>At1g23440.1 68414.m02937 pyrrolidone-carboxylate peptidase family
protein similar to Pyrrolidone-carboxylate peptidase
(Swiss-Prot:O58321) [Pyrococcus horikoshii]; contains
Prosite PS00141: Eukaryotic and viral aspartyl proteases
active site
Length = 217
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -3
Query: 315 EEPLEKMTESISETEDERSYTP--CLDENKSKDTSLETEKDKGLEGLDTEMISEDEGN 148
E P EK+ + ++R CL DT+ E K K E L++ ++S D+ N
Sbjct: 24 ENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNN 81
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 282 SETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMFSEEDKPKSVG 109
SE EDE +E + ++ E EKD EG++ + E E F EE + + G
Sbjct: 136 SEGEDEEEEEEDEEEEEEEEEEEEEEKDGDNEGIEDKFFKIKELEE-FLEEGEAEEYG 192
>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 702
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 330 VSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISED 157
V+P E ++ I E + R +ENK +D + E E + L + E ISE+
Sbjct: 7 VTPSSSESEDRRVTIIREADMNREEVAA-EENKFEDENCEQEPPENLNEPEEEKISEE 63
>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 506
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 516 SERKQMPSPKPRASLQPTE 460
SE+K+ PSP P +S+ P E
Sbjct: 28 SEKKKKPSPPPESSISPVE 46
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
family protein / pentatricopeptide (PPR)
repeat-containing protein contains Pfam domains PF01535:
PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1208
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -3
Query: 330 VSPRGEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEG 151
V+P E ++ I E + R +ENK +D + E E + L + E ISE+
Sbjct: 432 VTPSSSESEDERVTIIREADMNREEVA--EENKFEDENCEQESPENLNEPEEENISEEGD 489
Query: 150 N 148
N
Sbjct: 490 N 490
>At2g14140.1 68415.m01575 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 847
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Frame = -3
Query: 354 GDRERPASVSPRGEEPLEKMTESI---SETEDERSYTPCL-------DENKSKDTSLETE 205
GD E + EE EK E + + E E+ P +E K ++ E E
Sbjct: 472 GDEEMEGEEEKQEEEGKEKEEEKVEYRGDEETEKQEIPKQGDEEMEGEEEKQEEEGKEEE 531
Query: 204 KDK----GLEGLDTEMISEDEGNEMFSEEDKPKSVG 109
++K G EG + + I + EM EE+K + G
Sbjct: 532 EEKVEYRGDEGTEKQEIPKQGDEEMEGEEEKQEEEG 567
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -3
Query: 318 GEEPLEKMTESISETEDERSYTPCLDENKSKDTSLETEKDKGLEGLDTEMISEDEGNEMF 139
GEE EK E E E+E+ D + + + ETEK + + D EM E+ E
Sbjct: 558 GEE--EKQEEEGKEEEEEKICVEYKDHHSTCNVE-ETEKQENPKQGDEEMEREEGKEEKV 614
Query: 138 SEEDK 124
E D+
Sbjct: 615 EEHDE 619
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,268
Number of Sequences: 28952
Number of extensions: 222670
Number of successful extensions: 924
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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