Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L16
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33990.1 68414.m04214 hydrolase, alpha/beta fold family prote...    29   3.0  
At2g38660.1 68415.m04748 tetrahydrofolate dehydrogenase/cyclohyd...    29   3.9  
At3g57640.1 68416.m06422 protein kinase family protein contains ...    28   9.1  

>At1g33990.1 68414.m04214 hydrolase, alpha/beta fold family protein
           similar to polyneuridine aldehyde esterase GI:6651393
           from [Rauvolfia serpentina], SP|Q40708 PIR7A protein
           {Oryza sativa}, ethylene-induced esterase [Citrus
           sinensis] GI:14279437; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 348

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 584 ERVVRKMEFLXQGCG*HRPITGGMAERPVVGGL 486
           ER +++ +FL  G G  +P TG M E+P + GL
Sbjct: 218 ERFMKESQFLIYGNGKDKPPTGFMFEKPHMKGL 250


>At2g38660.1 68415.m04748 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 352

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/94 (25%), Positives = 39/94 (41%)
 Frame = -2

Query: 587 PERVVRKMEFLXQGCG*HRPITGGMAERPVVGGLVGPTFACIIAQQFGNLRKGDRFWYEN 408
           PE + RK + +    G    + G   +   V   VG T     + +FG    GD  + E 
Sbjct: 258 PEHITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEA 317

Query: 407 GGFDSSFTPAQLQQIRRISFAQVLCRTLDTIETI 306
            G  S+ TP     +  ++   +LC TL+  + I
Sbjct: 318 LGVASAITPVP-GGVGPMTITMLLCNTLEAAKRI 350


>At3g57640.1 68416.m06422 protein kinase family protein contains
           similarity to protein kinases
          Length = 356

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 423 ILVRKWRFRFIIHSGATTADQKDILRASSMSNFRH 319
           +L++KWR+RF  H+G      +DI  +S +S  ++
Sbjct: 91  LLIKKWRYRFSEHNGGNFC--RDIAISSIVSGHKN 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,999,922
Number of Sequences: 28952
Number of extensions: 345516
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)