Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L15
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    89   7e-19
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    58   2e-09
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   1.8  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   2.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   9.5  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 89.0 bits (211), Expect = 7e-19
 Identities = 41/49 (83%), Positives = 41/49 (83%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRG 649
           LL FA KQDLPNAMN AEITDKLG HSLR R WYIQATCATSGDGL  G
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEG 169


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 36/58 (62%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRGSRLALQSAQ 622
           LL  A KQDLP A++ A+ITD L    L+ R W +Q TCA +GDGL  G     Q+A+
Sbjct: 125 LLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 650 PRYSPSPEVAHVAWMYQLRXRSECXPSL-SVISAXFIAFGKSCLXAXIK 793
           P  SP PEV+H  W+  L       P L S  +   IAF   CL A I+
Sbjct: 16  PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIAFIR 63


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 413 LKYCFSKYYINYVYLNAINGMQINSVQ 333
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +1

Query: 208 LKKNKIVGNSPTLHTIFCSTSSRIEHA 288
           LKK K   N P L   FCS S R E A
Sbjct: 203 LKKAKKFPNFPKLKNFFCSYSHRHETA 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,571
Number of Sequences: 5004
Number of extensions: 57824
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)