Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L15
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         89   4e-18
SB_11310| Best HMM Match : Arf (HMM E-Value=0)                         69   3e-12
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         55   6e-08
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   7e-07
SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         50   2e-06
SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         48   1e-05
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)               46   4e-05
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         42   8e-04
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    39   0.005
SB_16166| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)                     30   1.9  

>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 41/49 (83%), Positives = 41/49 (83%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRG 649
           LL FA KQDLPNAMN AEITDKLG HSLR R WYIQATCATSGDGL  G
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRNRQWYIQATCATSGDGLYEG 169


>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
          Length = 255

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRGSRLALQSAQER 616
           LL  A KQDLP++M+  E+++KL  H+LR RNWYIQATCA  G G+  G     Q  Q R
Sbjct: 194 LLVLANKQDLPDSMSTTELSEKLSLHTLRSRNWYIQATCALKGQGVYEGLEWLAQQIQLR 253

Query: 615 Q 613
           +
Sbjct: 254 K 254


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRG 649
           +L  A KQDLPNA++ +EIT+KLG  S+R R WYIQA CAT G GL  G
Sbjct: 121 VLVMANKQDLPNALSVSEITEKLGLQSIRDRQWYIQAACATQGTGLYEG 169


>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 23/49 (46%), Positives = 32/49 (65%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRG 649
           LL  A KQD+ NAM  +EI +KL  + +R R W++Q+ CA  G+GL  G
Sbjct: 100 LLVIANKQDMANAMTASEIREKLKLNEIRGRPWFVQSACAVKGEGLFEG 148


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 24/49 (48%), Positives = 31/49 (63%)
 Frame = -2

Query: 804 GXXLLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGL 658
           G  LL FA KQDL NA   AEI+  LG +++R R W IQ   A +G+G+
Sbjct: 102 GVPLLVFANKQDLMNAATPAEISSNLGLNTIRSRGWQIQGCSALTGEGV 150


>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -2

Query: 804 GXXLLXFAXKQDLPNAMNXAEITDKLGXHSLRXRN-WYIQATCATSGDGLXRGSR-LALQ 631
           G  +L FA KQD PNA+   EIT  L  H L  R+ W++Q   A  G+GL  G R L+  
Sbjct: 123 GAPILIFANKQDCPNAIPPREITHMLSLHDLNARHLWFVQPCSALLGEGLLDGLRALSEM 182

Query: 630 SAQERQPLTVCAPTRRQ 580
             Q R  L      R++
Sbjct: 183 IVQWRLDLKAAKANRKR 199


>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = -2

Query: 783 AXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGL 658
           A KQDLPNA+   E+   LG    +   W++Q  CAT+GDGL
Sbjct: 128 ANKQDLPNALKAGEMAKHLGLLQHKRNPWHVQEACATNGDGL 169


>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
          Length = 257

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGL 658
           L+ FA KQD+  AM+ +E+++ LG  +L+ R W I  T A  G+GL
Sbjct: 206 LIVFANKQDMEGAMSSSEVSNALGLSALKSRTWAIFKTSAVKGEGL 251


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -2

Query: 804 GXXLLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGL 658
           G  ++  A KQDL  A+   ++ ++L  +      W IQ TCAT+GDGL
Sbjct: 211 GVPVVVVANKQDLLGAIGPDKMAEELSLYKHTKNPWRIQGTCATAGDGL 259


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 783 AXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGL 658
           A KQDLPN +   +I + LG   L+    ++Q   A++GDGL
Sbjct: 78  ANKQDLPNVLKAGDIAEHLGLLKLKRNPLHVQEAFASNGDGL 119


>SB_16166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 795 LLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQ 688
           LL  A KQD+  +M+ AEI+++L    ++   W+IQ
Sbjct: 53  LLILANKQDIKGSMSVAEISEQLNLACIKDHGWHIQ 88


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 594  AHIRLAVGVLELIGEPVETLXTVRLRKWRMSLG 692
            A  R+  G +EL  EP++   TV +R W++  G
Sbjct: 1143 ASFRVGHGAIELYSEPLKIALTVEIRGWKLLFG 1175


>SB_39092| Best HMM Match : Arf (HMM E-Value=8e-36)
          Length = 260

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/71 (19%), Positives = 30/71 (42%)
 Frame = -2

Query: 804 GXXLLXFAXKQDLPNAMNXAEITDKLGXHSLRXRNWYIQATCATSGDGLXRGSRLALQSA 625
           G  +L    K+DLPN+++  E+ ++L   S++ R     +      D + +   + +   
Sbjct: 122 GIPILVLGNKKDLPNSLDEKELVERLNLTSVQDREICCYSISCKEKDNIGKDKLIFVTEE 181

Query: 624 QERQPLTVCAP 592
               P  +  P
Sbjct: 182 DHSTPSKIVLP 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,156,819
Number of Sequences: 59808
Number of extensions: 448028
Number of successful extensions: 906
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)