Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L14
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 254 1e-68
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 133 3e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 112 5e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 105 7e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 5e-19
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 80 3e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 6e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 72 8e-14
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 39 0.001
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.77
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 4.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 254 bits (621), Expect = 1e-68
Identities = 118/134 (88%), Positives = 124/134 (92%)
Frame = -3
Query: 694 LPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 515
LPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SG
Sbjct: 242 LPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSG 301
Query: 514 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMRISKQE 335
GTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQM ISKQE
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 334 YDESGPSIVHRKCF 293
YDESGP IV+RKCF
Sbjct: 362 YDESGPGIVYRKCF 375
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = -1
Query: 765 YVALDFEQEMATXASSSSLEKSYDFP 688
YVALDFEQE+ T A SSSLEKSY+ P
Sbjct: 218 YVALDFEQELQTAAQSSSLEKSYELP 243
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 133 bits (321), Expect = 3e-32
Identities = 60/135 (44%), Positives = 91/135 (67%)
Frame = -3
Query: 697 RLPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 518
+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLS
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
Query: 517 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMRISKQ 338
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 337 EYDESGPSIVHRKCF 293
EY ++ +++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 112 bits (270), Expect = 5e-26
Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Frame = -3
Query: 694 LPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 515
LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSG
Sbjct: 242 LPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSG 301
Query: 514 GTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-L 371
G++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA +
Sbjct: 302 GSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIM 361
Query: 370 STFQQMRISKQEYDESG 320
+ M +SK E++E G
Sbjct: 362 AQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 105 bits (252), Expect = 7e-24
Identities = 57/135 (42%), Positives = 76/135 (56%), Gaps = 11/135 (8%)
Frame = -3
Query: 691 PDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDL 539
PDG G ERFR E LF PSF + G+HE Y SI+ CD ++R L
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343
Query: 538 YANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLST 365
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 344 LNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDN 403
Query: 364 FQQMRISKQEYDESG 320
FQ + +SKQEYDE G
Sbjct: 404 FQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 89.4 bits (212), Expect = 5e-19
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -3
Query: 601 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 422
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 421 P---ERKYSVWIGGSILASLSTFQQMRISKQEYDESGP---SIVHRKC 296
ER Y+ W+GGSIL+SL TF Q+ IS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 80.2 bits (189), Expect = 3e-16
Identities = 43/137 (31%), Positives = 70/137 (51%)
Frame = -3
Query: 709 REVLRLPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYAN 530
R++ + + QV+ + NERF PE LF PS + + GI E S+ +I+ L N
Sbjct: 263 RDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLEN 322
Query: 529 TVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMR 350
V GG +PG R+ E+ +LAP+ ++K+ P + W S + L + +
Sbjct: 323 VVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANK 381
Query: 349 ISKQEYDESGPSIVHRK 299
I++ EY E G +I+ RK
Sbjct: 382 ITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.5 bits (170), Expect = 6e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = -3
Query: 676 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 500
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 499 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 362
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 361 QQMRISKQEYDESGPSIVHR 302
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 72.1 bits (169), Expect = 8e-14
Identities = 31/118 (26%), Positives = 63/118 (53%)
Frame = -3
Query: 661 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 482
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 481 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMRISKQEYDESGPSIV 308
+++E+T++ P I + W G S + F+ +++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 547 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 377
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 376 SLSTFQQMRISKQEYDESGPSIVHRK 299
+ ++ I ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 756 LDFEQEMATXASSSSLEKSYDFPTVRSSPSETKDSVAQRLSSNPRSW 616
L EQEM S S + + P R + +DS A++L+S SW
Sbjct: 438 LKSEQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQLTSETPSW 484
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -1
Query: 732 TXASSSSLEKSYDFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 571
T +S+SS S D T+ S+PS S Q +S+P + +S P PS
Sbjct: 282 TSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPS 335
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 400 WIGGSILASLSTFQQMR---ISKQEYDESGPSIVHRK 299
++GGSI+A S + + ++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 475 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 365
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 723 SSSSLEKSYDFPTVRSSPSETKDSVAQRL 637
+SSS+ SYD P SSPS+ Q L
Sbjct: 296 TSSSMAHSYDSPPSPSSPSDAYGDPNQHL 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,295
Number of Sequences: 5004
Number of extensions: 59689
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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