Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L11
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     48   9e-06
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     48   9e-06
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     48   9e-06
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 48   1e-05
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)             48   1e-05
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)                   31   1.5  
SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 29   4.7  
SB_56987| Best HMM Match : Cornifin (HMM E-Value=1.5)                  29   6.2  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     28   8.2  

>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 339 FLHWYTGEGMDEMEFTEAESNMNDLV 364


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DL+
Sbjct: 159 FLHWYTGEGMDEMEFTEAESNMHDLI 184


>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
          Length = 271

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DL+
Sbjct: 221 FLHWYTGEGMDEMEFTEAESNMHDLI 246


>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
          Length = 375

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YT EGMD  +F EA++++ DL+
Sbjct: 299 FLHWYTEEGMDSQQFEEADNDILDLI 324


>SB_32584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 211 DQNSIPTNADSTQTPVPFCFCCTECIKF-GCCHE 113
           D+    T+ D      P CFC   C+ F  CCH+
Sbjct: 32  DERCNKTSRDWNDISQPKCFCDDMCVAFKDCCHD 65


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -2

Query: 214 ADQNSIPTNADSTQTPVPFCFCCTECIKFGCCHERQTFNCDGFSNRSFVSDDNQ 53
           A QN       S   PV    CC    ++   H + T N     +R  V DDNQ
Sbjct: 489 APQNQHEDQRQSFHPPVLSAGCCIYSFQYTVTHIKGTDNASDVLSRLPVGDDNQ 542


>SB_56987| Best HMM Match : Cornifin (HMM E-Value=1.5)
          Length = 752

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 551 TLRPRRRWPPGTVGTRKTRSXMLLSASVNSISSMPSPVYNAXKXAPEHS 697
           TL P+R   P T GT K +    ++A       +  PV+++   +P+H+
Sbjct: 70  TLAPKRAMDPRT-GTYKQKEVTFVAAPSAKQRRLSQPVFSSTSSSPDHN 117


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 SVYFRSAFTNFRSSSQRGLVEYQGM 322
           S YF + FTN    SQ+G++E QG+
Sbjct: 60  SDYFYAMFTNDMLESQKGVIELQGL 84


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESN 616
           F   YT EGMD +EFTE + N
Sbjct: 213 FLHWYTTEGMDPLEFTEIKRN 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,351
Number of Sequences: 59808
Number of extensions: 380091
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)