Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L11
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near...    48   8e-06
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near...    48   8e-06
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden...    48   8e-06
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide...    48   8e-06
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden...    48   8e-06
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden...    48   8e-06
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t...    48   8e-06
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden...    48   8e-06
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden...    48   8e-06
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam...    29   2.9  
At5g40540.1 68418.m04920 protein kinase, putative similar to pro...    29   5.1  
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne...    28   8.8  
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne...    28   8.8  
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide...    28   8.8  
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide...    28   8.8  
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id...    28   8.8  
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne...    28   8.8  

>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
           identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
           identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
           thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
          Length = 449

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
           identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
           identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
           GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 394 FLHWYTGEGMDEMEFTEAESNMNDLV 419


>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
           identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
           thaliana}
          Length = 447

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 395 FLHWYTGEGMDEMEFTEAESNMNDLV 420


>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
           identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDLV 601
           F   YTGEGMDEMEFTEAESNM DLV
Sbjct: 395 FLHWYTGEGMDEMEFTEAESNMNDLV 420


>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
           protein 
          Length = 454

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 105 VWRSWQHPNFIHSVQQKQNGTGVCVESALVGI 200
           +W     PN ++S+QQ +N T V V   + G+
Sbjct: 338 LWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGV 369


>At5g40540.1 68418.m04920 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 353

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 232 CSRNKMADQNSIPTNADSTQTPVP---FCFCC 146
           CS   + D++ IPT+A+S Q  V    F FCC
Sbjct: 322 CSLMTVRDKDQIPTDANSAQNEVRGSFFFFCC 353


>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDL 604
           F   Y GEGM+E EF+EA  ++  L
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAAL 428


>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDL 604
           F   Y GEGM+E EF+EA  ++  L
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAAL 428


>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDL 604
           F   Y GEGM+E EF+EA  ++  L
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAAL 428


>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
           identical to SP|P11139 Tubulin alpha-1 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDL 604
           F   Y GEGM+E EF+EA  ++  L
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAAL 428


>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
           identical to tubulin alpha-2/alpha-4 chain SP|P29510
           GB:P29510 from [Arabidopsis thaliana]
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDL 604
           F   Y GEGM+E EF+EA  ++  L
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAAL 428


>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
           nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
           chain from [Arabidopsis thaliana]
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 678 FXALYTGEGMDEMEFTEAESNMXDL 604
           F   Y GEGM+E EF+EA  ++  L
Sbjct: 404 FVHWYVGEGMEEGEFSEAREDLAAL 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,895,338
Number of Sequences: 28952
Number of extensions: 258781
Number of successful extensions: 597
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)