Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L10
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    44   3e-05
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    30   0.36 
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    29   0.63 
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    28   1.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   4.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   7.7  

>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = -3

Query: 606 KVNSQLTW*NSKPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVK 448
           KV+S L    ++P     +PG+G+P PK P+++G++++   +KFP  LT   K
Sbjct: 324 KVSSSLP---TQPGYEITYPGFGMPLPKNPSQRGNMIIECKVKFPTELTPAQK 373


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 570  PHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMD 433
            P+    +  + LP PKEP+ +   LV    KFP  LT     I+ D
Sbjct: 1029 PNLPMEYNDHTLPSPKEPSNQASNLVRSSDKFPNLLTNLDYSIISD 1074


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 549 PGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVK--EILMDTLPN 421
           PG G+    +   +GDL +  DI+FP+    G    EIL D LP+
Sbjct: 319 PGEGMYKDSKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPS 363


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 368 RIDIIY--LNLIQRRSKIF*LGKVSINISLTPVVKRSGNLMSN 490
           RI+ +Y     ++R + I    K++++ SLT V ++ GNL+SN
Sbjct: 772 RIERVYELTKTLRRTTSIAAAQKIALHHSLTNVAEKIGNLLSN 814


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 23/91 (25%), Positives = 42/91 (46%)
 Frame = -3

Query: 699  SSEKXVT*EHX*ISLKQALWAQPLKYQLCLEKVNSQLTW*NSKPHTVKRFPGYGLPFPKE 520
            S+++  T     + + + LW  P   +L  +K   QLT+   +   V+ FP   L    E
Sbjct: 899  SNDEEETISELSLEVLEKLWFSPASNELDCQKGYEQLTFLEKQKLRVQYFP--ILKLCAE 956

Query: 519  PTRKGDLLVAFDIKFPERLTTGVKEILMDTL 427
            P+ +  +L+   +K    + T  +EI + TL
Sbjct: 957  PSTERHVLLVTSLK---TMLTSKEEINLSTL 984


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 538 SIAWEPFDCVRFT 576
           SI WE +DCVR T
Sbjct: 516 SIGWEVYDCVRLT 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,393
Number of Sequences: 5004
Number of extensions: 58854
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)