BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_L10 (845 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 44 3e-05 SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 30 0.36 SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 29 0.63 SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 28 1.9 SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 4.4 SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 7.7 >SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces pombe|chr 3|||Manual Length = 379 Score = 44.0 bits (99), Expect = 3e-05 Identities = 19/53 (35%), Positives = 33/53 (62%) Frame = -3 Query: 606 KVNSQLTW*NSKPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVK 448 KV+S L ++P +PG+G+P PK P+++G++++ +KFP LT K Sbjct: 324 KVSSSLP---TQPGYEITYPGFGMPLPKNPSQRGNMIIECKVKFPTELTPAQK 373 >SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1087 Score = 30.3 bits (65), Expect = 0.36 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 570 PHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMD 433 P+ + + LP PKEP+ + LV KFP LT I+ D Sbjct: 1029 PNLPMEYNDHTLPSPKEPSNQASNLVRSSDKFPNLLTNLDYSIISD 1074 >SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 413 Score = 29.5 bits (63), Expect = 0.63 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 549 PGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVK--EILMDTLPN 421 PG G+ + +GDL + DI+FP+ G EIL D LP+ Sbjct: 319 PGEGMYKDSKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPS 363 >SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mcl1|Schizosaccharomyces pombe|chr 1|||Manual Length = 815 Score = 27.9 bits (59), Expect = 1.9 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Frame = +2 Query: 368 RIDIIY--LNLIQRRSKIF*LGKVSINISLTPVVKRSGNLMSN 490 RI+ +Y ++R + I K++++ SLT V ++ GNL+SN Sbjct: 772 RIERVYELTKTLRRTTSIAAAQKIALHHSLTNVAEKIGNLLSN 814 >SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1583 Score = 26.6 bits (56), Expect = 4.4 Identities = 23/91 (25%), Positives = 42/91 (46%) Frame = -3 Query: 699 SSEKXVT*EHX*ISLKQALWAQPLKYQLCLEKVNSQLTW*NSKPHTVKRFPGYGLPFPKE 520 S+++ T + + + LW P +L +K QLT+ + V+ FP L E Sbjct: 899 SNDEEETISELSLEVLEKLWFSPASNELDCQKGYEQLTFLEKQKLRVQYFP--ILKLCAE 956 Query: 519 PTRKGDLLVAFDIKFPERLTTGVKEILMDTL 427 P+ + +L+ +K + T +EI + TL Sbjct: 957 PSTERHVLLVTSLK---TMLTSKEEINLSTL 984 >SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosaccharomyces pombe|chr 2|||Manual Length = 834 Score = 25.8 bits (54), Expect = 7.7 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +1 Query: 538 SIAWEPFDCVRFT 576 SI WE +DCVR T Sbjct: 516 SIGWEVYDCVRLT 528 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,022,393 Number of Sequences: 5004 Number of extensions: 58854 Number of successful extensions: 124 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 124 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 418457710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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