Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_L10
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120 49 4e-06
01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251 49 5e-06
05_01_0207 + 1493224-1493385,1493475-1493839,1494313-1494390,149... 47 2e-05
02_02_0601 + 12021766-12022197 44 1e-04
05_01_0411 + 3243025-3243092,3243348-3243496,3243740-3243872,324... 41 0.001
08_02_0469 - 17531189-17531678,17531773-17531798,17533511-17533669 41 0.001
02_01_0225 - 1469295-1469733,1472352-1472767,1473603-1473658,147... 36 0.041
12_02_1140 + 26411424-26411998,26412491-26412761,26412848-26413405 36 0.054
08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287 36 0.054
03_06_0226 + 32495088-32495237,32496189-32496351,32496438-324965... 33 0.22
01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987 33 0.29
03_05_0497 + 24932336-24932485,24934037-24934199,24934306-249344... 32 0.66
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 31 1.5
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 30 2.7
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 29 6.2
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 8.1
>05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120
Length = 362
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 4/40 (10%)
Frame = -3
Query: 546 GYGLPFPKEPTRKGDLLVAFDIKFPERLT----TGVKEIL 439
G G+P PK+P++KG+L V FDIKFP RLT +GVK +L
Sbjct: 321 GEGMPIPKDPSKKGNLRVKFDIKFPARLTADQKSGVKRLL 360
>01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251
Length = 349
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = -3
Query: 570 PHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVK 448
P V+ PG G+P PK P +KGDL + F+I+FP RLT+ K
Sbjct: 300 PDYVEVVPGEGMPNPKGPNKKGDLKIKFNIRFPSRLTSDQK 340
>05_01_0207 +
1493224-1493385,1493475-1493839,1494313-1494390,
1496134-1496157,1496213-1496654
Length = 356
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = -3
Query: 546 GYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTLP 424
G G+P KEP++KGDL + F IKFP LT+ K + LP
Sbjct: 314 GEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLLP 354
>02_02_0601 + 12021766-12022197
Length = 143
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = -3
Query: 540 GLPFPKEPTRKGDLLVAFDIKFPERLTTGVK 448
G+P PK+P++KG+L + F+IKFP RLT+ K
Sbjct: 104 GMPIPKDPSKKGNLRIKFNIKFPSRLTSEQK 134
>05_01_0411 +
3243025-3243092,3243348-3243496,3243740-3243872,
3244740-3244860,3245065-3245181,3245303-3245389,
3245941-3246000,3246097-3246174,3246587-3246658,
3246767-3246925
Length = 347
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = -3
Query: 576 SKPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTL 427
+KP V++F G G+P + +KGDL V F++ FP+ LT K L L
Sbjct: 298 TKPKEVRKFKGEGMPL-YQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSIL 346
>08_02_0469 - 17531189-17531678,17531773-17531798,17533511-17533669
Length = 224
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -3
Query: 549 PGYGLPFPKEPTRKGDLLVAFDIKFPERLT 460
P G+P +EP R G L + FD+ FPERLT
Sbjct: 180 PSEGMPIAREPGRHGSLRIRFDVAFPERLT 209
>02_01_0225 -
1469295-1469733,1472352-1472767,1473603-1473658,
1473827-1473995
Length = 359
Score = 35.9 bits (79), Expect = 0.041
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 540 GLPFPKEPTRKGDLLVAFDIKFPERLTT 457
G P KEP +KG+L + FD+ FP RL++
Sbjct: 320 GWPIRKEPGKKGNLKIKFDVTFPTRLSS 347
>12_02_1140 + 26411424-26411998,26412491-26412761,26412848-26413405
Length = 467
Score = 35.5 bits (78), Expect = 0.054
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTLP 424
+P +K G G+P P KG L VAF + FP +T +++ + P
Sbjct: 347 RPGQLKAIDGEGMPVHGMPFAKGTLYVAFRVAFPGTMTPALRDAVAAAFP 396
>08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287
Length = 342
Score = 35.5 bits (78), Expect = 0.054
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -3
Query: 540 GLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTL 427
G+P KE R+G+L + FDI FP+RL++ ++ + L
Sbjct: 298 GMPIVKENGRRGNLRIKFDIVFPKRLSSDQRQNIRKVL 335
>03_06_0226 +
32495088-32495237,32496189-32496351,32496438-32496576,
32496669-32496945,32497051-32497249,32497379-32497704
Length = 417
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTLP 424
KP + K G+P + P KG L + F ++FP+ L + L LP
Sbjct: 308 KPDSFKAVNDEGMPMYQRPFMKGKLYIHFSVEFPDSLNPDQCKALETVLP 357
>01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987
Length = 342
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 570 PHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTL 427
P K G G+P + +GDL V F+I FP++LT ++ L L
Sbjct: 289 PGYEKIIKGEGMPIADQKGARGDLRVKFEIAFPKQLTDEQRDGLAQIL 336
>03_05_0497 +
24932336-24932485,24934037-24934199,24934306-24934447,
24934528-24934804,24934887-24935085,24935169-24935491
Length = 417
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTLP 424
KP K G+P + P KG L + F ++FP+ L + L LP
Sbjct: 309 KPDQFKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLAPEQCKALEAVLP 358
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPE--RLTTGVKEILMDTLP 424
KP K G+P P KG L V F+++FPE LT G L LP
Sbjct: 341 KPGQHKAINDEGMPQHGRPFMKGRLFVEFNVEFPEPGALTPGQCRSLEKILP 392
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPE 469
KP K G+P P KG L V F+++FPE
Sbjct: 596 KPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPE 630
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 247 LYILKPKLRLDILG--LLEHCVSCC 179
+Y L P LR+D+LG L+ H V CC
Sbjct: 723 MYALDPTLRVDLLGLSLICHSVVCC 747
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 440 NISLTPVVKRSGNLMSNATSRSPFL 514
++S T VVKR ++A+SRSPFL
Sbjct: 552 SLSATVVVKRGAPASTSASSRSPFL 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,450,838
Number of Sequences: 37544
Number of extensions: 340751
Number of successful extensions: 604
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -