Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L10
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)              58   9e-09
SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)                44   2e-04
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.006
SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)                  33   0.29 
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)                    32   0.67 
SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  

>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
          Length = 351

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = -3

Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTLP 424
           +P + KR  G GLP PK+ +RKGDL++ +D+  P  +T   K++LM+TLP
Sbjct: 301 QPGSSKRIVGEGLPMPKDNSRKGDLIIKYDVYLPNNITPAQKQVLMNTLP 350


>SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 30/50 (60%)
 Frame = -3

Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEILMDTLP 424
           KP + KR  G GLP PK P ++ D+LV F++ FP RL     + L + LP
Sbjct: 300 KPGSKKRIKGEGLPLPKIPGQRMDMLVTFEVVFPSRLAPANVDALRNILP 349


>SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)
          Length = 278

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -3

Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPERLTTGVKEIL 439
           +P   KR  G GLP  K P  + DL+V F+++FP  LT   +E L
Sbjct: 229 RPGMQKRIQGEGLPLSKNPIERADLIVTFEVEFPTNLTGEQREYL 273


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPE 469
           KP  +K     G+P  + P  KG LL+ FD+KFPE
Sbjct: 356 KPGDMKSIEDEGMPHHRNPFHKGRLLIQFDVKFPE 390


>SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
          Length = 386

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 573 KPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFP 472
           +P  ++   G G+P  + P  KG+L + FDI+FP
Sbjct: 281 EPGCIRGIVGEGMPAYRHPFDKGNLYIKFDIEFP 314


>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
          Length = 238

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 603 VNSQLTW*NSKPHTVKRFPGYGLPFPKEPTRKGDLLVAFDIKFPE-RLTTGVKEILMDTL 427
           V  ++TW  ++   +K+  G G+P  +    +GDL + FD++FP   L    KE+ ++ +
Sbjct: 157 VREKITWPGAR---IKK-KGEGMPSYENNHDRGDLYITFDVEFPRGSLDNQEKEVSLNLV 212

Query: 426 PN 421
            N
Sbjct: 213 QN 214


>SB_28906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 633  PLKYQLC-LEKVNSQLTW*NSKPHTVKRFP--GYGLPFPKEPTR 511
            P    LC L+K+ ++L W  S  H+V  +P   YGL  P  PT+
Sbjct: 1047 PRVTSLCVLKKILTRLVWATSAAHSVANYPFNYYGLYTPSMPTK 1090


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,050,668
Number of Sequences: 59808
Number of extensions: 427711
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)