Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L08
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    30   2.1  
At1g75210.1 68414.m08737 5' nucleotidase family protein contains...    28   8.3  

>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 417 VVLERTKNNVINKLY*SIHSLQNNWQQHDTQCSRSPKMSSLSLGLSI*RFWFAKTQETLP 596
           V+ ER K  + N ++  IH  Q+ W   D Q     ++S  SL +   R +F + ++ L 
Sbjct: 561 VLKERFK--IFNAMFDEIHKTQSTWIVSDEQMQSELRVSISSLVIPAYRSFFGRYKQHLD 618

Query: 597 PFDQANTY 620
              Q + Y
Sbjct: 619 SGKQTDKY 626


>At1g75210.1 68414.m08737 5' nucleotidase family protein contains
           Pfam profile: PF05761 5' nucleotidase family
          Length = 642

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 201 PVKC-FIWMKYFDIVTIHAGTPTFYFSD 121
           P  C F W++YFD+V   +  P F+  D
Sbjct: 380 PHTCNFDWLQYFDVVITGSAKPGFFHED 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,758
Number of Sequences: 28952
Number of extensions: 280817
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)