Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L07
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    29   0.032
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    29   0.032
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.8  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 679 VMAAPPPNYIQITIVSYKSQPAVPTRGPGPP 587
           VM +PP N + +T+  Y+  P++   GP  P
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGPALP 165


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 679 VMAAPPPNYIQITIVSYKSQPAVPTRGPGPP 587
           VM +PP N + +T+  Y+  P++   GP  P
Sbjct: 135 VMMSPPGNVLNLTMPKYEPNPSIIDPGPALP 165


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 107 CNIHLCPTNYMEIYCK 60
           C +  C   Y+EI CK
Sbjct: 774 CTVCTCDAKYLEIKCK 789


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 543 YNTLVLHFNCCLENV 499
           Y  +++ F+CCLE V
Sbjct: 243 YQIILVIFDCCLETV 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,802
Number of Sequences: 336
Number of extensions: 3129
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)