Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L07
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   31   1.1  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   3.2  
SB_33945| Best HMM Match : Rubella_Capsid (HMM E-Value=2.4)            28   7.4  
SB_36777| Best HMM Match : VWA (HMM E-Value=0)                         28   9.8  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 104 CITLRLIASVFPVDKLTNICNITYANLSAAGGMCSSAHPLRAQ*ILP 244
           CI LRL   V   D+L    + T+A  ++AGG C SA  +  Q I+P
Sbjct: 351 CIELRLQTQVTDPDQLAGDPSCTWACQTSAGGSCGSATKV-GQTIIP 396


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 104  CITLRLIASVFPVDKLTNICNITYANLSAAGGMCSSA 214
            C  LRL A V  +D  T + N T+A  ++ G  C SA
Sbjct: 972  CSELRLQAQVTDLDLETGVPNCTWACQTSTGATCGSA 1008


>SB_33945| Best HMM Match : Rubella_Capsid (HMM E-Value=2.4)
          Length = 323

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 679 RDVLVXPSCAGSFCSASADSRRPAC 753
           + +L  PS +G +C +++ S RP C
Sbjct: 117 KQLLPFPSTSGGYCRSTSSSHRPTC 141


>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1303

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 337 ISQSISKMKCSAPPPGRSVVVTLC*VKV 254
           + Q+I    C+APPP ++  V +C  KV
Sbjct: 372 VIQTIKDKACNAPPPTQTPTVKVCKAKV 399



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 337 ISQSISKMKCSAPPPGRSVVVTLC*VKV 254
           + Q+I    C+APPP ++  V +C  KV
Sbjct: 569 VIQTIKDKACNAPPPTQTPTVKVCKAKV 596


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 104 CITLRLIASVFPVDKLTNICNITYANLSAAGGMCS 208
           C  + L A + P D   N CN++Y  +SA   M S
Sbjct: 256 CGVVSLPAEIIPADMPHNYCNVSYEPVSAMVEMTS 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,038,392
Number of Sequences: 59808
Number of extensions: 377899
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)