Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L07
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   7.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 158 ICNITYANLSAAGGM 202
           IC ++++N S AGGM
Sbjct: 225 ICKLSHSNASVAGGM 239


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 158 ICNITYANLSAAGGM 202
           IC ++++N S AGGM
Sbjct: 225 ICKLSHSNASVAGGM 239


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -2

Query: 376 VIEIFVYFNLFFLISQSISKMKCSAPP 296
           +I +F+Y+N+F  +     K + +  P
Sbjct: 357 IIMVFLYYNIFKALRNRARKARANRKP 383


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 189 PPVECVRAHILCALNKYFLKCITLT*HNVTTTDRP 293
           P ++C  AHI C   +   KC   T    TT + P
Sbjct: 359 PVLDCHTAHIACKFAEIKEKCDRRT--GKTTEENP 391


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 189 PPVECVRAHILCALNKYFLKCITLT*HNVTTTDRP 293
           P ++C  AHI C   +   KC   T    TT + P
Sbjct: 70  PVLDCHTAHIACKFAEIKEKCDRRT--GKTTEENP 102


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 162 HIFVNLSTGNTDAISLSVMQYSFMSYQL 79
           H  ++LSTGN   ++  +     M Y L
Sbjct: 197 HSTIHLSTGNYSRLACEIQFVRSMGYYL 224


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 92  INEYCITLRLIASVFPVDKLTNICNITYA 178
           +NE    LR I    P DKL+ I  +  A
Sbjct: 269 LNEAFAALRKIIPTLPSDKLSKIQTLKLA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,923
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)