Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L07
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22180.1 68417.m03206 F-box family protein contains F-box dom...    31   1.1  
At1g30845.1 68414.m03772 expressed protein                             30   2.0  
At4g08400.1 68417.m01388 proline-rich extensin-like family prote...    29   3.5  

>At4g22180.1 68417.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 128 SVFPVDKLTNICN-ITYANLSAAGGMCSSAHPLRAQ*ILPQVHNLNLAQRYDYRSS 292
           S  P+D LT +   ++YAN   A  +CSS H    Q +  Q+  L L   YD  +S
Sbjct: 22  SELPLDLLTAVFERLSYANFQRAKSVCSSWHSGSRQSVPIQIPWLILFPEYDNNNS 77


>At1g30845.1 68414.m03772 expressed protein
          Length = 124

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 575 VFDYGKYIICNIILWYCILTVV*KTLSNL 489
           V  YG  +ICN+++W C +  + + LS+L
Sbjct: 35  VIKYGLVVICNVVMWACYVNSL-RALSSL 62


>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 513

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 691 PGRLVMAAPPPNYIQITIVSYKSQPAVPTRGPGPP 587
           P  +  + PPP Y     V+YKS P    R P PP
Sbjct: 235 PPYVYSSPPPPYYSPSPKVNYKSPPPPYYRSPPPP 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,654,595
Number of Sequences: 28952
Number of extensions: 245879
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)