SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L04
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne...   240   7e-64
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne...   240   7e-64
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide...   240   7e-64
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id...   240   7e-64
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne...   240   7e-64
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide...   237   7e-63
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide...   139   2e-33
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden...    81   1e-15
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden...    79   5e-15
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near...    78   7e-15
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near...    78   7e-15
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide...    78   7e-15
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t...    78   7e-15
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden...    76   3e-14
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden...    76   3e-14
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden...    76   3e-14
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin...    47   1e-05
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin...    44   1e-04
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    33   0.32 
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03...    30   1.7  
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    29   5.2  
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ...    28   6.9  
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase...    28   6.9  
At5g45840.1 68418.m05639 leucine-rich repeat transmembrane prote...    28   9.1  
At3g26855.1 68416.m03360 hypothetical protein                          28   9.1  

>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score =  240 bits (588), Expect = 7e-64
 Identities = 108/124 (87%), Positives = 116/124 (93%), Gaps = 2/124 (1%)
 Frame = -3

Query: 512 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 339
           CC   RGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374

Query: 338 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           VCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434

Query: 158 VGMD 147
           VG +
Sbjct: 435 VGAE 438



 Score =  102 bits (244), Expect = 4e-22
 Identities = 44/56 (78%), Positives = 48/56 (85%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           RIHF L +YAPV SA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 264 RIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMY 319


>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score =  240 bits (588), Expect = 7e-64
 Identities = 108/124 (87%), Positives = 116/124 (93%), Gaps = 2/124 (1%)
 Frame = -3

Query: 512 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 339
           CC   RGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374

Query: 338 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           VCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434

Query: 158 VGMD 147
           VG +
Sbjct: 435 VGAE 438



 Score =  102 bits (244), Expect = 4e-22
 Identities = 44/56 (78%), Positives = 48/56 (85%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           RIHF L +YAPV SA KAYHEQLSV EITNA FEPA+ M KCDPRHGKYMACC++Y
Sbjct: 264 RIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMY 319


>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 450

 Score =  240 bits (588), Expect = 7e-64
 Identities = 119/191 (62%), Positives = 140/191 (73%), Gaps = 2/191 (1%)
 Frame = -3

Query: 713 LDLPEFQXNWXLTPVSTSHWSRTRQSX-LPRRPTMNSFPSPRSQTHASSPPTRW*NATPV 537
           +D+ EFQ N  L P    H+  +  +  +      +   S    T+++  P         
Sbjct: 250 VDVTEFQTN--LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307

Query: 536 MASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 360
               ++A C   RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGD
Sbjct: 308 RHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGD 367

Query: 359 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 180
           LAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427

Query: 179 LEKDYEEVGMD 147
           LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438


>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
           identical to tubulin alpha-2/alpha-4 chain SP|P29510
           GB:P29510 from [Arabidopsis thaliana]
          Length = 450

 Score =  240 bits (588), Expect = 7e-64
 Identities = 119/191 (62%), Positives = 140/191 (73%), Gaps = 2/191 (1%)
 Frame = -3

Query: 713 LDLPEFQXNWXLTPVSTSHWSRTRQSX-LPRRPTMNSFPSPRSQTHASSPPTRW*NATPV 537
           +D+ EFQ N  L P    H+  +  +  +      +   S    T+++  P         
Sbjct: 250 VDVTEFQTN--LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307

Query: 536 MASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 360
               ++A C   RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGD
Sbjct: 308 RHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGD 367

Query: 359 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 180
           LAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427

Query: 179 LEKDYEEVGMD 147
           LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438


>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
           nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
           chain from [Arabidopsis thaliana]
          Length = 450

 Score =  240 bits (588), Expect = 7e-64
 Identities = 119/191 (62%), Positives = 140/191 (73%), Gaps = 2/191 (1%)
 Frame = -3

Query: 713 LDLPEFQXNWXLTPVSTSHWSRTRQSX-LPRRPTMNSFPSPRSQTHASSPPTRW*NATPV 537
           +D+ EFQ N  L P    H+  +  +  +      +   S    T+++  P         
Sbjct: 250 VDVTEFQTN--LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307

Query: 536 MASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 360
               ++A C   RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGD
Sbjct: 308 RHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGD 367

Query: 359 LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 180
           LAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA
Sbjct: 368 LAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAA 427

Query: 179 LEKDYEEVGMD 147
           LEKDYEEVG +
Sbjct: 428 LEKDYEEVGAE 438


>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
           identical to SP|P11139 Tubulin alpha-1 chain
           {Arabidopsis thaliana}
          Length = 450

 Score =  237 bits (580), Expect = 7e-63
 Identities = 118/190 (62%), Positives = 135/190 (71%), Gaps = 3/190 (1%)
 Frame = -3

Query: 713 LDLPEFQXNWXLTPVSTSHWSRTRQSXL--PRRPTMNSFPSPRSQTHASSPPTRW*NATP 540
           +D+ EFQ N  L P    H+  +  + +    +     F  P   T    P        P
Sbjct: 250 VDITEFQTN--LVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDP 307

Query: 539 VMASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 363
                ++A C   RGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGG
Sbjct: 308 -RHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGG 366

Query: 362 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 183
           DLAKVQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 367 DLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426

Query: 182 ALEKDYEEVG 153
           ALEKDYEEVG
Sbjct: 427 ALEKDYEEVG 436


>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 427

 Score =  139 bits (336), Expect = 2e-33
 Identities = 73/139 (52%), Positives = 90/139 (64%), Gaps = 2/139 (1%)
 Frame = -3

Query: 713 LDLPEFQXNWXLTPVSTSHWSRTRQSX-LPRRPTMNSFPSPRSQTHASSPPTRW*NATPV 537
           +D+ EFQ N  L P    H+  +  +  +      +   S    T+++  P         
Sbjct: 250 VDVTEFQTN--LVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307

Query: 536 MASTWLAVCCT-RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 360
               ++A C   RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGD
Sbjct: 308 RHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGD 367

Query: 359 LAKVQRAVCMLSNTTAIAE 303
           LAKVQRAVCM+SN+T++AE
Sbjct: 368 LAKVQRAVCMISNSTSVAE 386


>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
           identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
           thaliana}
          Length = 447

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 38/115 (33%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  I  ++ K +  FV+W P   K  +   PPT         ++ A   + 
Sbjct: 319 RGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFVG 370

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 371 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 263 RLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMF 318


>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
           identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 38/115 (33%), Positives = 64/115 (55%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  I  I+ K +  FV+W P   K  +   PP          ++ A   + 
Sbjct: 319 RGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMAATFVG 370

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 371 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 263 RLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIF 318


>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 37/115 (32%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + 
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF 317


>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
           identical to SP|P29512 Tubulin beta-2/beta-3 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 37/115 (32%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + 
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF 317


>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
           identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
           thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
          Length = 449

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 37/115 (32%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + 
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMF 317


>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
           GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 37/115 (32%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  ++ K +  FV+W P   K  +   PPT         ++ A   + 
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMF 317


>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
           identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 37/115 (32%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  I+ K +  FV+W P   K  +      + P G    ++ A   + 
Sbjct: 318 RGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----DIAPKG----LKMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  LSV E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVF 317


>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
           identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/115 (31%), Positives = 64/115 (55%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  ++ K +  FV+W P   K  +      + P G    +  A   + 
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  L+V E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF 317


>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
           identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/115 (31%), Positives = 65/115 (56%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           RG +  K+V+  +  ++ K +  FV+W P   K  +      + P G    ++ A   + 
Sbjct: 318 RGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVC----DIAPTG----LKMASTFIG 369

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 159
           N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -2

Query: 672 RIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 505
           R+HF +V +AP+ S     +  LSV E+T   ++  N M   DPRHG+Y+    ++
Sbjct: 262 RLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVF 317


>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
           (TUBG2) identical to  SP|P38558 Tubulin gamma-2 chain
           (Gamma-2 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           +G+V P  V+ ++  I+ ++ + F+DW P   +V ++ + P V     ++ +     ML+
Sbjct: 327 QGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLA 381

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDYE 162
           + T+I   ++R   ++D +  K+AF+  Y    M    +  EF E+R+ + +L  +Y+
Sbjct: 382 SHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439


>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
           (TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
           (Gamma-1 tubulin) {Arabidopsis thaliana}
          Length = 474

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 324
           +G+V P  V+ ++  I+ ++ + F++W P   +V ++ + P V     ++ +     ML+
Sbjct: 327 QGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLA 381

Query: 323 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDYE 162
           + T+I   +++   ++D +  K+AF+  Y    M    +  EF E+R+ + +L  +Y+
Sbjct: 382 SHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 292 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 185
           A ++S  + +P+V+S    S R WR  SS  P+R W
Sbjct: 31  AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66


>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
           PF03138: Plant protein family. The function of this
           family of plant proteins is unknown;
          Length = 698

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 387 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 491
           LV DT+L    TPVD ++  L      G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 164 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 280
           R  +R +PG +G+ R+  PP P R  S + H  +T  +T
Sbjct: 8   RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46


>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 503 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 360
           +G  V  D  A   T  TK+ +   DW P+  FK      PP ++P  D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355


>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK4) identical to MAP kinase kinase
           4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
           gi_13265419
          Length = 366

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +2

Query: 77  ASAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRR 238
           A+A  +  H++S      P  +RS  +LL++P   R  P     P  L + LPPP P   
Sbjct: 301 ATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSS 360

Query: 239 TSA 247
           +S+
Sbjct: 361 SSS 363


>At5g45840.1 68418.m05639 leucine-rich repeat transmembrane protein
           kinase, putative  and genscan+
          Length = 668

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/103 (23%), Positives = 40/103 (38%)
 Frame = -3

Query: 629 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTRGDVVPKDVNAAIATIKT 450
           P  P  +  P P + T AS PP ++   +      WL V       V   +  A+     
Sbjct: 276 PLIPPSSPPPLPTNNTIASDPPRKFEEKSKGFKDVWLYVVIGVAAFVAMLIIVAVIFFFR 335

Query: 449 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN 321
           KR ++ +    TG    +     T VP  + ++++ A    SN
Sbjct: 336 KRAVKSIGPWKTGLSGQLQKAFVTGVPKLNRSELETACEDFSN 378


>At3g26855.1 68416.m03360 hypothetical protein
          Length = 163

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 271 SCTPSVLSCTGTSVRVWRRESSPK 200
           SC P +LS   + VR W  +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,484
Number of Sequences: 28952
Number of extensions: 358441
Number of successful extensions: 1313
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -