Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_L01
         (1093 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.29 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.39 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.68 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 648 GGGXXPPXPXPPPPP 692
           G    PP P PPPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 233 PPPPPPPP 256
           P PPPPPP
Sbjct: 341 PAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 233  PPPPPPPP 256
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 40  AXGPXXGELXSXLXGXXXGPPXXGGGXXGGGPPXPPP 150
           A GP      S        PP    G   GGPP  PP
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.89
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = -1

Query: 205 PPPPXXXXGAPPPPXXXXGGGXXGGPPPXPPPXXXGGPXFXPXXRXVIPPSRGL 44
           P P      +P  P          GPPP  PP   G P      + +I P+ G+
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP---GAPPSQNPSQMMISPASGI 71



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 200 PPXXXXGXPPPPXXXXGGGGXGGPPPXXPP 111
           P     G PP P      GG  G PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = -3

Query: 200 PPXXXXGXPPPPXXXXGGGGXGGPPPXXPPPXXGGPXFXP 81
           P     G  P P         G PP     P  GGP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 233  PPPPPPPP 256
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,500
Number of Sequences: 438
Number of extensions: 8334
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36632304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)