Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K24
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 40 0.002
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 34 0.15
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 33 0.35
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 32 0.62
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 31 1.1
SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081) 31 1.1
SB_54882| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_26944| Best HMM Match : Conotoxin (HMM E-Value=0.31) 30 2.5
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 29 3.3
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 29 3.3
SB_4962| Best HMM Match : FAD_binding_4 (HMM E-Value=5.7e-31) 29 4.3
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 29 4.3
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 29 5.7
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 29 5.7
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 28 7.6
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 28 7.6
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = -3
Query: 624 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCL 451
AQ PS SRS+ R+ SR Q + SRS SR++ + RS+ +S S ++S SRS L
Sbjct: 36 AQSPSGSRSRSRSRSRSQSQSRSRSRSRSRSRSRSRSRSRSSSRSRSRSRSRSRSRSL 93
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRST 457
S SRS+ R+ SR + + SRS+SR++ + RS+ S S G +QST S+
Sbjct: 54 SQSRSRSRSRSRSRSRSRSRSRSSSRSRSRSRSRSRSRSLSGGSSQSTRNSS 105
Score = 31.5 bits (68), Expect = 0.81
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 433
S SR + + Q P + SRS SR++ + RS+ S S ++S SRS RS
Sbjct: 24 SRSRGSNGSRGKAQSPSGSRSRSRSRSRSQSQSRSRSRSRSRSRSRSRSRSRSSSRSRSR 83
Query: 432 YRTQLRYR 409
R++ R R
Sbjct: 84 SRSRSRSR 91
>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 35.9 bits (79), Expect = 0.038
Identities = 35/106 (33%), Positives = 43/106 (40%)
Frame = -3
Query: 729 TPGIFPNQCLTPVEKPVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPS 550
TP P++ TP P Y T P +Y PS + + TPSRY P TPS
Sbjct: 532 TPWSTPSRYNTPWSTPSRY---NTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPS 588
Query: 549 RSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRY 412
R T P R T ST +T ST +P+ T RY
Sbjct: 589 R--YNTPWSTPSRYN-TPWSTPSRYNTPWST-PSRYNTPWSTPSRY 630
Score = 35.5 bits (78), Expect = 0.050
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = -3
Query: 729 TPGIFPNQCLTPVEKPVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPS 550
TP P++ TP P Y T P +Y PS + + TPSRY P TPS
Sbjct: 622 TPWSTPSRYNTPWSTPSRY---NTPWSTPSRYNTPWSTPSRYNTPWPTPSRYNTPWSTPS 678
Query: 549 RST 541
R T
Sbjct: 679 RVT 681
Score = 35.1 bits (77), Expect = 0.066
Identities = 29/87 (33%), Positives = 36/87 (41%)
Frame = -3
Query: 672 PGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSP 493
P K + P +Y PS + + TPSRY P TPSR T P R T
Sbjct: 498 PNTKVTESTPSRYNTPLPTPSRYNTPWSTPSRYNTPWSTPSR--YNTPWSTPSRYN-TPW 554
Query: 492 STGHTQSTSRSTCLCTLRSPYRTQLRY 412
ST +T ST +P+ T RY
Sbjct: 555 STPSRYNTPWST-PSRYNTPWSTPSRY 580
Score = 34.7 bits (76), Expect = 0.087
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = -3
Query: 729 TPGIFPNQCLTPVEKPVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPS 550
TP P++ TP P Y T P +Y PS + + TPSRY P TPS
Sbjct: 582 TPWSTPSRYNTPWSTPSRY---NTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPS 638
Query: 549 R 547
R
Sbjct: 639 R 639
Score = 34.7 bits (76), Expect = 0.087
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = -3
Query: 729 TPGIFPNQCLTPVEKPVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPS 550
TP P++ TP P Y T P +Y PS + + TPSRY P TPS
Sbjct: 592 TPWSTPSRYNTPWSTPSRY---NTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPS 648
Query: 549 R 547
R
Sbjct: 649 R 649
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRS 436
S SRS+ ++ SR + +P+RS S + + RS S S HT+S SRS RS
Sbjct: 406 SSSRSRTKSRSRSRIRSRSPARSRSWSHTRSRSRSHTRSRSRSHTRSRSRSRIRSRSRS 464
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -3
Query: 558 TPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLRYR 409
T SRS SR + + P RS+ S + ++S +RS RS R+++R R
Sbjct: 412 TKSRSRSRIRSRSPARSRSWSHTRSRSRSHTRSRSRSHTRSRSRSRIRSR 461
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -3
Query: 645 PLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRT--Q*KRPCRSQLTSPSTGHTQS 472
P K L P + TP + Q TP +S+ +T + C + ++ S+ HT+
Sbjct: 91 PCKDKLLHNTPCKEQLSHNTPCKEQLSHNTPCKSSCQTTHHARSSCHTTHSARSSCHTKH 150
Query: 471 TSRSTCLCTLRSPYRTQLRY 412
++RS+C T P + QL +
Sbjct: 151 STRSSCHTT--QPCKKQLSH 168
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 32.7 bits (71), Expect = 0.35
Identities = 39/130 (30%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Frame = -3
Query: 783 TP-YTKXYKYQ*RSMXTXPTPGIFPNQCLTPVEKPVPYPGRKTSALXPLKYTLTAQCPSM 607
TP YT Y + T PT P TP P P ++ YT T S
Sbjct: 53 TPSYTPTTSYTPTTSYT-PTTSYTPTPSYTPTTSYTPTPSYTSTT----SYTPTTSYTST 107
Query: 606 SRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPS----TGHTQSTS-RSTCLCTL 442
+ S TPS P TP+ S + T P S +PS T +T +TS ST T
Sbjct: 108 T-SYTPTPSYTPTPSYTPTPSYTSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTS 166
Query: 441 RSPYRTQLRY 412
Y + Y
Sbjct: 167 TPSYTSTTSY 176
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 31.9 bits (69), Expect = 0.62
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Frame = -3
Query: 714 PNQCLTPVEKPVPY--PGRKTS---ALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPS 550
P QC++P + + P + S + PLK TL CP SQ +P + PP
Sbjct: 832 PKQCISPPKNTLKQVCPSQLESPKQCISPLKNTLKQVCP----SQLESPKQCISPPKNTL 887
Query: 549 RSTSRTQ*KRPCRSQLTSPST----GHTQSTSRSTCL 451
+ +Q + P +S L+ +T G +Q S C+
Sbjct: 888 KQVCPSQLESPKQSDLSPKNTLKQAGPSQLESPEPCV 924
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 31.5 bits (68), Expect = 0.81
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Frame = -1
Query: 749 GPXGQXLPXAY--SQTSA--LPPSRSPSHTPVEKPVPXXXXXXXXXXXXXXXREASSVPR 582
GP Q +P S SA LPP R PS P P+P P
Sbjct: 1021 GPTEQPVPPKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPR--QPPP 1078
Query: 581 QGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 471
TS P R+ P+P+ A P+ P RQ P+P
Sbjct: 1079 PSTSQPVPPPRQPDPIPTNP--AHPTEPPPRQPKPTP 1113
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 544 HIPYPVEKAVPFPVNIPVDRPYPVHIEKHVPVH 446
H P+PV V P +PV P PV + VP+H
Sbjct: 212 HHPFPVRVPVRVPFRVPVRVPVPVRVP--VPIH 242
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 514 PFPVNIPVDRPYPVHIEKHVPVHI 443
PFPV +PV P+ V + VPV +
Sbjct: 214 PFPVRVPVRVPFRVPVRVPVPVRV 237
>SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)
Length = 524
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/68 (26%), Positives = 21/68 (30%)
Frame = -1
Query: 737 QXLPXAYSQTSALPPSRSPSHTPVEKPVPXXXXXXXXXXXXXXXREASSVPRQGTSARPL 558
Q P QT PP++ P PV +P P E P P
Sbjct: 228 QKAPPPVPQTKRKPPAKLPPRQPVAEPEPERQPEPEPEPEQEPEPEPEPEPEPEPEPEPE 287
Query: 557 PRREAHPV 534
P E PV
Sbjct: 288 PEPEPEPV 295
>SB_54882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 699 TPVEKPVPYPGRKTSALXPLKYTLTAQC-PSMSRSQFRTPSRYQCPPLTPSRS-TSRT 532
TP+ +P+P+P A L L A PS + + PSR C L PSR+ SRT
Sbjct: 182 TPLRRPLPFPYSFAQAFT-LPVLLCADLHPSHTPLRRHNPSRTLCSSLYPSRTPLSRT 238
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -3
Query: 627 TAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLC 448
T S SR+ R+ SR Q ++ SRS S +Q + +S S S ++S SRS
Sbjct: 222 TPSSGSGSRNSSRSASRSQSHSVSRSRSKSLSQSRSRSQSHSASRSVSRSRSRSRSGSRS 281
Query: 447 TLRS 436
RS
Sbjct: 282 RTRS 285
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = -3
Query: 714 PNQCLTPVEK-PVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTS 538
P TP + P + K S P T P+ + P++ P TP+ +T
Sbjct: 20 PQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTP 79
Query: 537 RTQ*KRPCRSQLTSPSTGHTQSTSRST 457
+ P S LT P+ T + ++ T
Sbjct: 80 TPKTPTPTTSTLTKPTPATTPTPTKPT 106
>SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 450 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 539
TG WTG+G TG TG+GT TG+G
Sbjct: 171 TGHGTGRWTGHG--TGRWTGHGTGRWTGHG 198
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 450 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 539
TG WTG+G TG TG+GT G G
Sbjct: 179 TGHGTGRWTGHG--TGRWTGHGTGMGQGVG 206
>SB_26944| Best HMM Match : Conotoxin (HMM E-Value=0.31)
Length = 217
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Frame = -1
Query: 704 ALPPSRSPSHTPV--EKP--VPXXXXXXXXXXXXXXXREASSVPRQGTSARPLPRREAH- 540
AL P P TPV E P P + VPR+G P+PR + H
Sbjct: 129 ALVPREDPPVTPVPREDPHVAPVPREDPHVALVPREDPHVALVPREGPHVAPVPREDPHV 188
Query: 539 -PVPSRKGRAVP 507
PVP P
Sbjct: 189 APVPREDPHVAP 200
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -3
Query: 696 PVEKPVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSR-STSRTQ*KR 520
P +KP K PL+ T S + S F+ + P TPS+ S SR
Sbjct: 419 PEDKPPKEKAEKEEEKKPLEAKTTPNVGSGASSAFQKNTPSPSPKTTPSKPSWSR---PT 475
Query: 519 PCRSQLTSPSTGHTQS 472
P S TSPS T+S
Sbjct: 476 PAASASTSPSGTKTKS 491
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 504 LTSPSTGHTQSTSRSTCLCTLRSPYRTQLRY 412
L P+T HT T+ T CT R PYR +RY
Sbjct: 112 LRIPNTLHTTHTAYRT-QCTYRIPYRYHIRY 141
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQCPPLTP--SRSTSRTQ*KRPCRSQLTSPSTGHTQST 469
S SRS R+ SR P L+P SRS SR++ + +S SP+ +T++T
Sbjct: 427 SYSRSPVRSWSRSHSPSLSPQRSRSYSRSRSRSFSKSISGSPTPKYTRTT 476
>SB_4962| Best HMM Match : FAD_binding_4 (HMM E-Value=5.7e-31)
Length = 916
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 716 SQTSALPPSRSPSHTPVEKPV 654
SQ A PP++SP+ TP + PV
Sbjct: 257 SQAPAYPPNKSPNSTPPDSPV 277
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*K------RPCRSQLTSPSTGHT-QSTSRSTC 454
S SRS+ RTPS P T SR++SR + K + + T S G +T+++ C
Sbjct: 1375 SRSRSRTRTPSTPFTPSTTSSRASSRGKAKGGAKTTKTTKKCTTRKSRGQNGDTTTKTKC 1434
Query: 453 LCTLR 439
+ T R
Sbjct: 1435 ITTRR 1439
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQ----CPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 460
++SR Q R PS PP S SR+ + RS+ +PST T ST+ S
Sbjct: 1341 ALSRQQRRRPSPSSLGSLAPPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSS 1395
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -1
Query: 692 SRSPSHTPVEKPVPXXXXXXXXXXXXXXXREASSVPRQGTSARPLPRREAHPVPSRKGRA 513
+R P+H P+E+PVP + + +P RP+P P R
Sbjct: 632 TRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLERPVPAVTRLPTDLPLERP 691
Query: 512 VPS 504
VP+
Sbjct: 692 VPA 694
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -3
Query: 612 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPS 490
S SRS+ RTP R++ +P++ SR++ + P R + S S
Sbjct: 62 SFSRSKSRTPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRS 102
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -3
Query: 666 RKTSALXPLKYTLTAQCPSMSRSQFRTPSRYQ-CPPLTPSRSTSRTQ*KRPCRSQLTSP- 493
+K L + L+AQC S + +PS +Q P TP+ TQ P + T+P
Sbjct: 402 KKKMRLDQITDKLSAQCKSQIEAAASSPSAFQVAKPHTPT-PPPPTQQPAPQPTMQTTPT 460
Query: 492 --STGHTQST 469
ST HT T
Sbjct: 461 HSSTSHTPPT 470
>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1446
Score = 28.3 bits (60), Expect = 7.6
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Frame = -3
Query: 726 PGIFPNQCLTPVEKPVPYPGRKTSALXPLKYTLTAQCPSMSRSQFRTPSR-----YQCPP 562
P + + LTP+ + S+ L +T A + S+ P R Y PP
Sbjct: 946 PVLNSSPSLTPLYEERCQETPTDSSTASLAHTSPAHLATASQITHPLPHRTISIPYPSPP 1005
Query: 561 LTPSRSTSRTQ*KRPCRS-QLTSPSTGHTQSTSRSTCLCTLRSPYRT 424
T S +S+ P R+ L PS+ H+ S S+ T PY T
Sbjct: 1006 HTTSSQSSQATHTPPPRAVDLPHPSSPHSSSALYSSPSRTSNLPYTT 1052
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = -3
Query: 690 EKPVPYPGRKTSALXPLKYTLTAQCPSMS-RSQFRTPSRYQCPPLTPSRSTSRTQ*KRPC 514
E PV + A + +T + P+ S ++ R P+ C P T S + P
Sbjct: 141 EGPVVMARLRVCAPANINFTTAPEPPAKSAQTPPRIPTPTSCQPSTISPGGTPYMYGGPY 200
Query: 513 RSQLTSPSTGHTQSTSRSTCLCTL 442
RS LT P + RS C T+
Sbjct: 201 RSALTYPVLVQQKRLDRSPCHVTM 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,010
Number of Sequences: 59808
Number of extensions: 340170
Number of successful extensions: 1556
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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