Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K23
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 202 7e-53
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 196 3e-51
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 71 2e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 38 0.002
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 202 bits (492), Expect = 7e-53
Identities = 113/221 (51%), Positives = 132/221 (59%), Gaps = 3/221 (1%)
Frame = -1
Query: 784 PTYTNLNXSSDRFXLD-HXXLRFDGALNWDLTXVPX*LGALPPVSTSHWSRTRQSXL-PR 611
PTY NLN + LRF G+LN DL L P + H+ S +
Sbjct: 226 PTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRI---HFPLVTYSPIVSA 282
Query: 610 RXTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY-PRM*TRPSLPSKTK 434
+ S + T+ P ++A C PR K++
Sbjct: 283 AKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSR 342
Query: 433 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 254
RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 343 RTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLM 402
Query: 253 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 131
Y+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 403 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 128 bits (308), Expect = 1e-30
Identities = 54/76 (71%), Positives = 65/76 (85%)
Frame = -3
Query: 662 PRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 483
PRIHFPLVTY+P+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGD 326
Query: 482 VVPKDVNAAIATIKNQ 435
V+P+DV AA+ +IK++
Sbjct: 327 VIPRDVQAAVTSIKSR 342
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 196 bits (479), Expect = 3e-51
Identities = 111/221 (50%), Positives = 132/221 (59%), Gaps = 3/221 (1%)
Frame = -1
Query: 784 PTYTNLNXSSDRFXLD-HXXLRFDGALNWDLTXVPX*LGALPPVSTSHWSR-TRQSXLPR 611
P+Y NLN + LRF+G+LN DL L P + H+ T +
Sbjct: 222 PSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRI---HFPLVTYAPIVSA 278
Query: 610 RXTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY-PRM*TRPSLPSKTK 434
+ S + T+ P A ++A C PR K K
Sbjct: 279 AKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAK 338
Query: 433 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 254
RTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLM 398
Query: 253 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 131
Y+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 399 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 130 bits (313), Expect = 3e-31
Identities = 56/74 (75%), Positives = 63/74 (85%)
Frame = -3
Query: 662 PRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 483
PRIHFPLVTYAP+ SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGD
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGD 322
Query: 482 VVPKDVNAAIATIK 441
V+P+DV AA+ TIK
Sbjct: 323 VIPRDVQAAVTTIK 336
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 71.3 bits (167), Expect = 2e-13
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Frame = -1
Query: 442 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKF 263
+TK + FV+W P + PP DL + + + N+T+I E + RL +F
Sbjct: 334 QTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQF 385
Query: 262 DLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 134
M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 386 SAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 69.7 bits (163), Expect = 5e-13
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = -3
Query: 662 PRIHFPLVTYAPVXSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGD 483
PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+RG
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGK 320
Query: 482 VVPKDVNAAIATI--KNQAYY 426
V K+V+ I ++ KN AY+
Sbjct: 321 VSMKEVDEQIRSVQTKNSAYF 341
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = -3
Query: 665 TPRIHFPLVTYAPVXS---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCM 498
+PR HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 263 SPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILD 322
Query: 497 LYRGDVVPKDVNAAIATIKNQAY 429
+ +G+ P DV+ ++ I+ + Y
Sbjct: 323 IIQGEADPADVHKSLLRIRERRY 345
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 578 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 453
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 450 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGK 593
S G +LGY ++ A++V+A + V HL+ G D + K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 111 EPKSTK 94
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 473 WVRRHHGTAYSKPCTCHDGG 532
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,294
Number of Sequences: 5004
Number of extensions: 62554
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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