Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K21
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.4  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   3.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   5.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   5.5  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 248 RPRQPGSRHRPRRHAPLHSPRRPTSQWSPPSPAGHRHLFTPTQ 376
           +P  P +R  PR+  P  S         PP+P  H+   +P +
Sbjct: 48  KPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASPVK 90


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 471 CIQKDTCFCXKGHYGRRCEFSKCVIPCLNGG 379
           CI++      K  Y +RC+F K     LNGG
Sbjct: 266 CIRRTALQTVKNKYAQRCQFFKVDYVPLNGG 296


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 471 CIQKDTCFCXKGHYGRRCEFSKCVIPCLNGG 379
           CI++      K  Y +RC+F K     LNGG
Sbjct: 266 CIRRTALQTVKNKYAQRCQFFKVDYVPLNGG 296


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 KSH*VFVFNLYIIVAFCIRLI 215
           + H VFVFN   IVA C+R I
Sbjct: 75  RKHPVFVFNSASIVAMCLRAI 95


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 29/109 (26%), Positives = 35/109 (32%)
 Frame = +2

Query: 260 PGSRHRPRRHAPLHSPRRPTSQWSPPSPAGHRHLFTPTQRPPFKHGITHFENSHLRP*CP 439
           P   H+P  H P         +  PP P  H         PP  H   H    H+ P  P
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEP--GEHMPPPPMH---HEPGEHMPP-PP 263

Query: 440 LXQKQVSFWIHFPPFIHFCAHIPPSQCRPW*PCGQEQRPGAVQLPPFMH 586
           +  +      H PP      H  P +  P  P      PG    PP MH
Sbjct: 264 MHHEPGE---HMPP---PPMHHEPGEHMP--PPPMHHEPGEHMPPPPMH 304


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 631 GVHGAALPHGAVLPAVHERRQLHRARPLLLSAGLPGPTLRGRYMCT 494
           G+HG  +        +  +R    A P L +AG P P L   ++ T
Sbjct: 177 GIHGEDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVT 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,585
Number of Sequences: 5004
Number of extensions: 56943
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)