Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K20
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.53 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   6.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   6.5  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 599 WSSQAVITLQALSRALRQWSCFSKNLTSFELP 694
           WSS    TLQ+ +      SC+S+++ SF LP
Sbjct: 20  WSSGPNATLQSSACTDDLSSCWSEDMGSFSLP 51


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -2

Query: 336 PLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQA 190
           P  ++  M+  G   +  H     H    QPP+Q   +   QPP  + A
Sbjct: 181 PHHQQQHMMYGGQQGANMHQQGPPHQ---QPPIQQQPNQGQQPPGNTAA 226


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 683 NSLDFLKSKTTASKPLIEPAELLLPGLTRGLSHM 582
           N   F+K +T    P   P   L  GL  GLS M
Sbjct: 61  NMQGFVKQQTAPHGPPYAPHPSLSSGLGGGLSGM 94


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -2

Query: 336 PLSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQA 190
           P  ++  M+  G   +  H     H    QPP+Q   +   QPP  + A
Sbjct: 183 PHHQQQHMMYGGQQGANMHQQGPPHQ---QPPIQQQPNQGQQPPGNTAA 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,238
Number of Sequences: 336
Number of extensions: 2377
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)