Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_K20
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 33 0.26
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047... 31 0.80
06_03_1074 + 27394124-27394247,27395229-27395305,27395469-273956... 31 1.4
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 30 1.8
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 29 4.3
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 29 5.6
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 29 5.6
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 28 7.4
02_04_0055 - 19290975-19292312 28 9.8
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 246 PPVQTADDIAAQPPPRSQADIDYELKVRKFLEM 148
PP++ DD++ Q PPR+ AD+ +K + LEM
Sbjct: 1072 PPLEEPDDVSGQLPPRNGADLTGGVKEKVDLEM 1104
>01_05_0249 -
19903154-19903454,19904114-19904168,19904707-19904791,
19905140-19905511
Length = 270
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 746 TEAQKAYEDCLAIIPFHEEAQNSLDFLKSKTTASKPLIEPAELLLPG 606
++A KA E C A H+E D ++ TTA + + EPA+L+ G
Sbjct: 74 SDAAKALEVCKAADVMHKEVAAPADLMQEGTTAEE-VAEPADLMQEG 119
>06_03_1074 +
27394124-27394247,27395229-27395305,27395469-27395662,
27395779-27395866,27396316-27396603
Length = 256
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 590 LAPWSSQAVITLQALSRALRQWSCFSKNL 676
L PW+S + T QA +RA RQ + +SK L
Sbjct: 149 LLPWNSNVITTEQATTRASRQTTNYSKPL 177
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/87 (25%), Positives = 35/87 (40%)
Frame = -2
Query: 333 LSKRMAMLGDGDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFL 154
+++ ++ LGD S T NS PY D P + Q D KV++ L
Sbjct: 658 INRSLSALGDVISALATKNSHI--PYRNSKLTHLLQDSLELGPAKKQVDTAELQKVKQML 715
Query: 153 EMTKEDSDYEEKVRNFLAETTQYKRNR 73
E K+D ++ L + Q N+
Sbjct: 716 ERAKQDIRLKDDSLRKLEDNCQNLENK 742
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 264 HP-YGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLE-MTKEDSDYEEKVRNFLAETT 91
HP Y + PP +A AA PPP +D + + ++ K +E + K ++E +R+ +
Sbjct: 82 HPAYMHPPPFDSAPPPAAAPPP---SDPELQKRIDKVVEYIAKNGPEFEVVIRDKQHDNP 138
Query: 90 QY 85
Y
Sbjct: 139 DY 140
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -2
Query: 303 GDSTSRTHNSQFNHPYGYQPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSDYE 124
G +T H Q G PP + DD P P+S+ + ++R+ LE +E S+ +
Sbjct: 8 GSTTPPPHLHQLLSGTGAAPPPSSHDDAHPHPHPQSRRTVPAR-RLRQRLE--QEVSELK 64
Query: 123 EKVRN 109
+++RN
Sbjct: 65 KQLRN 69
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 255 GYQPPVQTADDIAAQPPPRSQA 190
G PPVQT D A PPP ++A
Sbjct: 230 GGAPPVQTQDQAQATPPPDTRA 251
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 776 GRSYEDETXITEAQKAYEDCLAIIPFHEEA-QNSL 675
G Y D IT A +AYE CL I P A QN L
Sbjct: 397 GVLYRDAGSITSAVQAYEKCLQIDPDSRNAGQNRL 431
>02_04_0055 - 19290975-19292312
Length = 445
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 144 WSSRGTCAPSTHSQYQPETAA 206
W+SRG A H Q QP AA
Sbjct: 215 WASRGGSAAGAHEQQQPRAAA 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,967
Number of Sequences: 37544
Number of extensions: 282061
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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