Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_K18
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                  147   1e-35
SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 28   7.5  
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)                   28   10.0 

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score =  147 bits (356), Expect = 1e-35
 Identities = 75/104 (72%), Positives = 79/104 (75%)
 Frame = -1

Query: 681 MVSIEDPFDQDDWSAWANLTGRTPIQIVGDDLTVTNPKRIATAVEKKACNCLLLKVNQIG 502
           +VSIED FDQD W AW+ LTG   IQIVG          I TA+EKKACNCLLLKVNQIG
Sbjct: 129 VVSIEDAFDQDHWDAWSKLTGNVDIQIVG----------IQTAIEKKACNCLLLKVNQIG 178

Query: 501 SVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVVGLSTGQ 370
           SVTESI A  LA+ NGWG MVSHRSGETEDTFIADLVVGL  GQ
Sbjct: 179 SVTESIKACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCAGQ 222


>SB_13920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
 Frame = -1

Query: 678 VSIEDPFDQDDWSAWANLTGRTPIQ--IVGDDLTVTNPKRIATAVEKKACNCLLLKVNQI 505
           ++  D +DQD   AW  L  R   +  ++G++L   NP  +AT V +K  +  LL  +  
Sbjct: 233 IAANDFYDQDR-EAWTKLNQRIGEKCFVIGNELYRRNPSILATGVTEKLSSVALLSADNA 291

Query: 504 GSVTESIDAHLLAKKNGWGTMVSHRSGETEDTFIADLVV----------GLSTGQ--IKT 361
            +VTE  +        G   M+S    E  +T   D V            ++TG   I+ 
Sbjct: 292 NTVTELWEKIRAVADQGGLVMLSKGQVEDVNTLAVDFVSTVVNTIPVANAVATGARFIRL 351

Query: 360 GAPCRSERLAKYNQILRIEEELGVNAK 280
           G P R E + K+ +++ IE+ L  N K
Sbjct: 352 GGPARMEHVTKHRRMIEIEQILEQNGK 378


>SB_35743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
 Frame = +1

Query: 262 EVLPGVFGVDAKFLFNAQNLVV--LGET--LRATRGAGLDLTRGQTNYQVGNKGIFGLTR 429
           E+LPG+ G  A F+F A    V  LGE   L     A   + R Q++++  NKG     R
Sbjct: 235 ELLPGLVGSIANFVFKAAEEAVKFLGENAWLLILAVAAFLVRRMQSSHR--NKGALPPGR 292

Query: 430 SVRDHCA-PSVLLGQQVSIN*LCYAADLIDLQ*QTVA--CLLLNCSSDALRVCHR 585
              D    P +  G  +S + LC   D +  +   V     L+  + DALRV H+
Sbjct: 293 HAVDPVLHPRMPTGHVMSTDWLCLGVDRVCAELHRVRGFLQLIVVADDALRVYHQ 347


>SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
 Frame = +1

Query: 262 EVLPGVFGVDAKFLFNAQNLVV--LGET--LRATRGAGLDLTRGQTNYQVGNKGIFGL-- 423
           E+LPG+ G  A F+F A    V  LGE   L     A   + R Q++++  N GI  L  
Sbjct: 274 ELLPGLVGSIANFVFKAAGEAVKFLGENAWLLILAVAAFLVRRMQSSHR-NNCGILALPP 332

Query: 424 -TRSVRDHCAPSVLLGQQVSIN*LCYAADLIDLQ*QTVA--CLLLNCSSDALRVCHR 585
              +V     P +  G  +S + LC   D +  +   V     L+  + DALRV H+
Sbjct: 333 GRHAVDPVLHPRMPTGHVMSTDWLCLGVDRVCAERHGVRGFLQLIVVAHDALRVYHQ 389


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 765  RSXIPIPGDYLSSDKLAD-VYLDFIKDFPMVSIEDPFDQD 649
            +S +   GD  + + +A+  ++DF++D P V+ E+P D D
Sbjct: 3324 KSLVDTVGDDAAGELMAEPFFVDFLRDAPEVTGEEPEDAD 3363


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 326 TTKFCALKRNLASTPNTPGRTSVDRSKNSLKKT 228
           T++  +LKR+L ++P T  RTS+  S+ +  KT
Sbjct: 111 TSRKTSLKRSLKTSPKTSRRTSLKTSQKTSPKT 143


>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
          Length = 580

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 753 PIPGDYLSSDKLADVYLDFIKDFPMVSIEDPFDQDDWSAWANLTGR 616
           P P  YLS D         + + P VS E+P  +D+W    + +GR
Sbjct: 142 PPPASYLSRD---------LGEAPQVSREEPLSEDEWRTMLDKSGR 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,032,016
Number of Sequences: 59808
Number of extensions: 480703
Number of successful extensions: 1304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)